View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1789_high_22 (Length: 253)

Name: NF1789_high_22
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1789_high_22
NF1789_high_22
[»] chr5 (8 HSPs)
chr5 (17-253)||(32557917-32558153)
chr5 (117-252)||(32767714-32767849)
chr5 (30-253)||(32762813-32763036)
chr5 (124-253)||(28474673-28474802)
chr5 (21-251)||(32858064-32858294)
chr5 (124-253)||(32739903-32740032)
chr5 (17-225)||(32710030-32710238)
chr5 (174-253)||(32656274-32656353)
[»] chr1 (2 HSPs)
chr1 (27-253)||(17583313-17583539)
chr1 (27-253)||(17591220-17591446)
[»] chr7 (2 HSPs)
chr7 (31-253)||(7969957-7970179)
chr7 (175-246)||(37576939-37577010)
[»] chr4 (1 HSPs)
chr4 (124-253)||(21524363-21524492)
[»] chr2 (1 HSPs)
chr2 (184-216)||(16756836-16756868)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 32557917 - 32558153
Alignment:
Q  17 gaaccaaaataaccaaatggaatcatgagatactctgatgaaagagttgctgaagtagaccgttggatattcttcggagaagaatggaacttcagacggg 116  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32557917 gaaccaaaataaccaaatggaatcatgagatactctgatgaatgagttgctgaagtagaccgttggatattcttcggagaagaatggaacttcagacggg 32558016  T
Q  117 atgtcttagacctagccaatatatcataactataaccagcttcagaagagttgacatcaatgcagctaatattgactgcatttcccagaagcatagtact 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32558017 atgtcttagacctagccaatatatcataactataaccggcttcagaagagttgacatcaatgcagctaatattgactgcatttcccagaagcatagtact 32558116  T
Q  217 attattgagagtaaatagtttcccatcattttcctct 253  Q
    |||||||||||||||||||||||||||||||||||||    
T  32558117 attattgagagtaaatagtttcccatcattttcctct 32558153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 117 - 252
Target Start/End: Complemental strand, 32767849 - 32767714
Alignment:
Q  117 atgtcttagacctagccaatatatcataactataaccagcttcagaagagttgacatcaatgcagctaatattgactgcatttcccagaagcatagtact 216  Q
    |||||| |||||||||||||||||||||||||||  | |  ||||| |||||   | ||||||||| ||||| |||||||||||| | ||| ||||||||    
T  32767849 atgtctgagacctagccaatatatcataactatactcggactcagaggagttaggaccaatgcagcaaatatagactgcatttcctaaaagtatagtact 32767750  T
Q  217 attattgagagtaaatagtttcccatcattttcctc 252  Q
    |||||||||| |||||||||| ||||||||||||||    
T  32767749 attattgagaataaatagtttgccatcattttcctc 32767714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 253
Target Start/End: Complemental strand, 32763036 - 32762813
Alignment:
Q  30 caaatggaatcatgagatactctgatgaaagagttgctgaagtagaccgttggatattcttcggagaagaatggaacttcagacgggatgtcttagacct 129  Q
    ||||||||||||  ||| |||||||||||||||||||| ||| |   |||||||  ||||||  | |||| || || |||||   | || ||| ||| ||    
T  32763036 caaatggaatcacaagaaactctgatgaaagagttgctaaagcaacacgttggacgttcttcacaaaagactgtaatttcagtttgcatatctgagagct 32762937  T
Q  130 agccaatatatcataactataaccagcttcagaagagttgacatcaatgcagctaatattgactgcatttcccagaagcatagtactattattgagagta 229  Q
    |||||||||||||||||||||  |||  |||||||||||   | | | ||||| |||||||||||||||||| | |||  |||| |||||||||||| ||    
T  32762936 agccaatatatcataactatactcagactcagaagagttaggaccgaggcagcaaatattgactgcatttcctaaaagtgtagttctattattgagaata 32762837  T
Q  230 aatagtttcccatcattttcctct 253  Q
    || ||||| |||||||||||||||    
T  32762836 aacagtttgccatcattttcctct 32762813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 253
Target Start/End: Complemental strand, 28474802 - 28474673
Alignment:
Q  124 agacctagccaatatatcataactataaccagcttcagaagagttgacatcaatgcagctaatattgactgcatttcccagaagcatagtactattattg 223  Q
    |||||||||||||||||||||||||||  | |  |||||||||||   | ||||||||| |||||||||| ||||||||| |||  | || |||||||||    
T  28474802 agacctagccaatatatcataactatactcggactcagaagagttaggaccaatgcagcaaatattgactccatttcccaaaagtgtggttctattattg 28474703  T
Q  224 agagtaaatagtttcccatcattttcctct 253  Q
    ||| |||||||||| || ||| ||||||||    
T  28474702 agaataaatagtttgccctcagtttcctct 28474673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 32858294 - 32858064
Alignment:
Q  21 caaaataaccaaatggaatcatgagatactctgatgaaagagttgctgaagtagaccgttggatattcttcggagaagaatggaacttcagacgggatgt 120  Q
    ||||| |||||||||||||||  ||  |||||||||||||||||||| ||||| |||||||||  |  |||  | |||| || || ||||    | || |    
T  32858294 caaaagaaccaaatggaatcacaaggcactctgatgaaagagttgctaaagtaaaccgttggacgtatttcacaaaagactgtaatttcaatttgcatat 32858195  T
Q  121 cttagacctagccaatatatcataactataaccagcttcagaagagttgacatcaatgcagctaatattgactgcatttcccagaagcatagtactatta 220  Q
    || |||||||||| |||||||| |||||||    | |||| |||||||   | ||||||| | |||||| ||||||||||| | |  || ||||||||||    
T  32858194 ctgagacctagccgatatatcagaactatacttggattcacaagagttaggaccaatgcaacaaatattaactgcatttcctaaactcagagtactatta 32858095  T
Q  221 ttgagagtaaatagtttcccatcattttcct 251  Q
    |||||| |||||||||| |||||||||||||    
T  32858094 ttgagaataaatagtttgccatcattttcct 32858064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 253
Target Start/End: Complemental strand, 32740032 - 32739903
Alignment:
Q  124 agacctagccaatatatcataactataaccagcttcagaagagttgacatcaatgcagctaatattgactgcatttcccagaagcatagtactattattg 223  Q
    |||| ||||||||||||| ||||||||  |||  ||||||| ||    | ||| ||||| ||||||||| |||||||| |  | | ||||||||||||||    
T  32740032 agacgtagccaatatatcgtaactatactcagactcagaagcgtctggaccaaagcagcaaatattgacagcatttcctaacaacgtagtactattattg 32739933  T
Q  224 agagtaaatagtttcccatcattttcctct 253  Q
    ||| ||||||||||  ||||||||||||||    
T  32739932 agaataaatagtttgtcatcattttcctct 32739903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 32710238 - 32710030
Alignment:
Q  17 gaaccaaaataaccaaatggaatcatgagatactctgatgaaagagttgctgaagtagaccgttggatattcttcggagaagaatggaacttcagacggg 116  Q
    |||||||||| |||||||||||||| |||  ||  ||||||||||  |||| || ||   ||||||| |||||||||| |||| || ||||||| || |     
T  32710238 gaaccaaaatgaccaaatggaatcacgaggaacgttgatgaaagatctgctaaactaacgcgttggacattcttcggaaaagactgtaacttcaaactgc 32710139  T
Q  117 atgtcttagacctagccaatatatcataactataaccagcttcagaagagttgacatcaatgcagctaatattgactgcatttcccagaagcatagtact 216  Q
    || | | |||||| ||||||||||||||   ||| |  |  |||||| ||||   | |||||||||||||| |||| ||||||||||||  || | ||||    
T  32710138 atatttgagacctggccaatatatcatactgataccacggctcagaatagttaggaccaatgcagctaatactgaccgcatttcccagactcacaatact 32710039  T
Q  217 attattgag 225  Q
    |||||||||    
T  32710038 attattgag 32710030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 32656274 - 32656353
Alignment:
Q  174 caatgcagctaatattgactgcatttcccagaagcatagtactattattgagagtaaatagtttcccatcattttcctct 253  Q
    |||| |||| ||||||||  |||||||||| |||| |||  |||||||||||| |||||||||| |||| | ||||||||    
T  32656274 caatacagcaaatattgatagcatttcccaaaagcgtagctctattattgagaataaatagtttgccataactttcctct 32656353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 253
Target Start/End: Complemental strand, 17583539 - 17583313
Alignment:
Q  27 aaccaaatggaatcatgagatactctgatgaaagagttgctgaagtagaccgttggatattcttcggagaagaatggaacttcagacgggatgtcttaga 126  Q
    |||||||||||||||  ||  |||||||||||||||||||| ||| |  | ||||||  ||||||    |||| || || |||||   |||| ||| |||    
T  17583539 aaccaaatggaatcacaagcaactctgatgaaagagttgctaaaggaacctgttggacgttcttcacgaaagactgtaatttcagtttggatatctgaga 17583440  T
Q  127 cctagccaatatatcataactataaccagcttcagaagagttgacatcaatgcagctaatattgactgcatttcccagaagcatagtactattattgaga 226  Q
    ||||||||||||||||||||||||  | |  |||||||||||   | ||||||||| || ||||||||||||||||| ||||||| | ||||||||||||    
T  17583439 cctagccaatatatcataactatagtcggactcagaagagttaggaccaatgcagcaaagattgactgcatttcccaaaagcatacttctattattgaga 17583340  T
Q  227 gtaaatagtttcccatcattttcctct 253  Q
     |||||||||| |||||||||||||||    
T  17583339 ataaatagtttaccatcattttcctct 17583313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 253
Target Start/End: Complemental strand, 17591446 - 17591220
Alignment:
Q  27 aaccaaatggaatcatgagatactctgatgaaagagttgctgaagtagaccgttggatattcttcggagaagaatggaacttcagacgggatgtcttaga 126  Q
    |||||||||||||||  ||  |||||||||||||||||||| |||||    ||||||  ||||||| | |||| || || |||||   | |  ||| |||    
T  17591446 aaccaaatggaatcacaagcaactctgatgaaagagttgctaaagtaacttgttggacgttcttcgcaaaagactgtaatttcagtatgcaattctgaga 17591347  T
Q  127 cctagccaatatatcataactataaccagcttcagaagagttgacatcaatgcagctaatattgactgcatttcccagaagcatagtactattattgaga 226  Q
    ||||||||||||||||||| ||||    |  |||||||||||   | ||||||||| || ||||||||||||||||| |||| |||| ||||||||||||    
T  17591346 cctagccaatatatcataattatagttggactcagaagagttaggaccaatgcagcaaagattgactgcatttcccaaaagcgtagttctattattgaga 17591247  T
Q  227 gtaaatagtttcccatcattttcctct 253  Q
     |||||||||| |||||||||||||||    
T  17591246 ataaatagtttaccatcattttcctct 17591220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 253
Target Start/End: Original strand, 7969957 - 7970179
Alignment:
Q  31 aaatggaatcatgagatactctgatgaaagagttgctgaagtagaccgttggatattcttcggagaagaatggaacttcagacgggatgtcttagaccta 130  Q
    |||||||||||  ||  |||||||||||||||||||| ||||| || ||||||  ||||||| | |||| || || |||||   | || ||| |||| ||    
T  7969957 aaatggaatcacaaggaactctgatgaaagagttgctaaagtaaactgttggacgttcttcgcaaaagactgtaatttcagtttgcatatctcagactta 7970056  T
Q  131 gccaatatatcataactataaccagcttcagaagagttgacatcaatgcagctaatattgactgcatttcccagaagcatagtactattattgagagtaa 230  Q
    ||| ||||||||||||||||  | |   ||||||||||   | ||||||||| |||||||||||| ||||||| |  ||||||| | ||||| ||| |||    
T  7970057 gccgatatatcataactatactcggacccagaagagttaggaccaatgcagcaaatattgactgcttttcccaaactcatagtattgttatttagaataa 7970156  T
Q  231 atagtttcccatcattttcctct 253  Q
    ||||||| || ||||||||||||    
T  7970157 atagttttccgtcattttcctct 7970179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 37577010 - 37576939
Alignment:
Q  175 aatgcagctaatattgactgcatttcccagaagcatagtactattattgagagtaaatagtttcccatcatt 246  Q
    |||||| | |||||||| ||||||||| | |||||||||||||||||||||| |||||||||| ||| ||||    
T  37577010 aatgcaacaaatattgattgcatttccaaaaagcatagtactattattgagaataaatagtttgccaacatt 37576939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 253
Target Start/End: Complemental strand, 21524492 - 21524363
Alignment:
Q  124 agacctagccaatatatcataactataaccagcttcagaagagttgacatcaatgcagctaatattgactgcatttcccagaagcatagtactattattg 223  Q
    |||||||||||||||||||||||||||    |  ||| |||||||   | ||||||| | |||||| ||||||||||| | |  ||||||||||||||||    
T  21524492 agacctagccaatatatcataactatacttggactcaaaagagttatgaccaatgcaacaaatattaactgcatttcctaaactcatagtactattattg 21524393  T
Q  224 agagtaaatagtttcccatcattttcctct 253  Q
    ||| |||||||||| |||||||||||||||    
T  21524392 agaataaatagtttgccatcattttcctct 21524363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 16756868 - 16756836
Alignment:
Q  184 aatattgactgcatttcccagaagcatagtact 216  Q
    |||||||||||||||||||| ||||||||||||    
T  16756868 aatattgactgcatttcccaaaagcatagtact 16756836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University