View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_high_28 (Length: 249)
Name: NF1789_high_28
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 44109433 - 44109195
Alignment:
| Q |
1 |
cagatccacattgatgttttgcattctgtacagttattacaaaaatccaaatcactttcatccaactttgtgagacatatagctttgaagaggcaaatta |
100 |
Q |
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| T |
44109433 |
cagatccacattgatgttttgcattctgtacagttattacaaaaattcaaatcactttcatccaactttgagagacatatagctttgaagaggcaaatta |
44109334 |
T |
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| Q |
101 |
tttcttgagatgctgacagttattaccaacctccaactattacacttcaagactccaatcttgtatcgattctaagtgtagatagcacattctcctcttt |
200 |
Q |
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| T |
44109333 |
tttcttgagatgcagacagttattaccaacctccaactattacacttcacgactccaatcttgtatcgattctaagtgtagatagcacattctcctcttt |
44109234 |
T |
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| Q |
201 |
ctgtcggaaaatggtttggcaaaacatttagtatctgtg |
239 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
44109233 |
ctgttggaaaatggtttggcaaaacatttagtatctgtg |
44109195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 43760320 - 43760251
Alignment:
| Q |
23 |
attctgtacagttattacaaaaatccaaatcactttcatccaactttgtgagacatatagctttgaagag |
92 |
Q |
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| T |
43760320 |
attctgttcagttattacaaaaattcaaatcactttcatcaaactttgagaggcagatagctttgaagag |
43760251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 44146781 - 44146716
Alignment:
| Q |
174 |
aagtgtagatagcacattctcctctttctgtcggaaaatggtttggcaaaacatttagtatctgtg |
239 |
Q |
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||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||| ||||| |
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| T |
44146781 |
aagtgtagatagcacgttcttctctttctgtcgggaaatgctttggcaaaacatttagtacctgtg |
44146716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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