View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_high_29 (Length: 248)
Name: NF1789_high_29
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 12078952 - 12079107
Alignment:
| Q |
2 |
catcaatctaatccaagtggctagaaaactatttaaaaactaatttgagacatgatcaaaatcaataaatatcaaatctag-atgtcattactagaattc |
100 |
Q |
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| T |
12078952 |
catcaatctaatccaagtggctagaaaactatttaaaaaataatttgagacatgatcaaaatcaataaatatcaaatctagaatgtcattactagaattc |
12079051 |
T |
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| Q |
101 |
aataatttcattaaacatgaaatctaaattaaactcttgaacttctgacttaacat |
156 |
Q |
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| T |
12079052 |
aataatttcattaaacatgaaatctaaattaaactcttgaacttctgacttaacat |
12079107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 12079557 - 12079628
Alignment:
| Q |
162 |
caacatcagtgaattttactgcttcactacatgatttgagcttttcatgtttctgtttgccttcattttatg |
233 |
Q |
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| T |
12079557 |
caacatcagtgaattttactgcttcactacatgatttgagcttttcttgtttctgtttgtcttcattttatg |
12079628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 14637132 - 14637195
Alignment:
| Q |
14 |
ccaagtggctagaaaactatttaaaaactaatttgagacatgatcaaaatcaataaatatcaaa |
77 |
Q |
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| T |
14637132 |
ccaagtgggtcgaaaactatttaaaagataatttaagacatgatcaatatcaatacatatcaaa |
14637195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 14629598 - 14629648
Alignment:
| Q |
27 |
aaactatttaaaaactaatttgagacatgatcaaaatcaataaatatcaaa |
77 |
Q |
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| T |
14629598 |
aaactatttaaaagataatgtgagacatgatcaatatcaataaatatcaaa |
14629648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 14629417 - 14629480
Alignment:
| Q |
14 |
ccaagtggctagaaaactatttaaaaactaatttgagacatgatcaaaatcaataaatatcaaa |
77 |
Q |
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|||||||| | | ||||||||||||| |||| |||||||||||||| || ||||||||||||| |
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| T |
14629417 |
ccaagtgggttggaaactatttaaaagataatatgagacatgatcaatattaataaatatcaaa |
14629480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 12137888 - 12137828
Alignment:
| Q |
52 |
catgatcaaaatcaataaatatcaaa-tctaga-tgtcattactagaattcaataatttca |
110 |
Q |
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| T |
12137888 |
catgatcaatatcaataaatttcaaaatcttgaatggcattactagaattcaataatttca |
12137828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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