View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1789_high_33 (Length: 237)

Name: NF1789_high_33
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1789_high_33
NF1789_high_33
[»] chr5 (12 HSPs)
chr5 (1-221)||(32558140-32558360)
chr5 (7-222)||(28474465-28474680)
chr5 (8-205)||(32709811-32710008)
chr5 (1-207)||(25469195-25469401)
chr5 (1-202)||(32762625-32762826)
chr5 (7-209)||(32662233-32662435)
chr5 (7-207)||(32656346-32656546)
chr5 (1-196)||(32739721-32739916)
chr5 (1-201)||(32767526-32767726)
chr5 (36-222)||(32652120-32652306)
chr5 (1-115)||(32857961-32858075)
chr5 (135-222)||(32857863-32857953)
[»] chr7 (2 HSPs)
chr7 (3-208)||(7970168-7970373)
chr7 (11-222)||(37576724-37576935)
[»] chr1 (2 HSPs)
chr1 (1-202)||(17591032-17591233)
chr1 (1-202)||(17583125-17583326)
[»] chr2 (2 HSPs)
chr2 (1-205)||(16752097-16752301)
chr2 (66-205)||(16756578-16756717)
[»] chr4 (1 HSPs)
chr4 (1-208)||(21524166-21524376)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32558140 - 32558360
Alignment:
Q  1 catcattttcctcttgaagaacagcagcttcatcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccatgttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32558140 catcattttcctcttgaagaacagcagcttcatcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccgtgttt 32558239  T
Q  101 atggttgaaatggttggacaacacttctaatgaggcaacaaaatcacaacctttaacgggacagtaacatggcacatagatgcattcttcttcatgtttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32558240 atggttgaaatggttggacaacacttctaatgaggcaacaaaatcacaacctttaacgggacagtaacatggcacatagatgcattcttcttcatgtttc 32558339  T
Q  201 ctctttccactttgacttatt 221  Q
    |||||||||||||||||||||    
T  32558340 ctctttccactttgacttatt 32558360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 28474680 - 28474465
Alignment:
Q  7 tttcctcttgaagaacagcagcttcatcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccatgtttatggtt 106  Q
    |||||||||||||||||   | |||||||||||| ||||| |||||| |||||||||||||||||||||||| |||| |||| ||||||||||||||| |    
T  28474680 tttcctcttgaagaacaatggtttcatcattagacttcaaagagacattgaaggagtgaccataagaaaatttgattcgagaatccccatgtttatggct 28474581  T
Q  107 gaaatggttggacaacacttctaatgaggcaacaaaatcacaacctttaacgggacagtaacatggcacatagatgcattcttcttcatgtttcctcttt 206  Q
    |||||||||||||||||||||| |||| ||| |||| ||||||||   ||  || ||||||||||| |  ||||||||||| |||||||| ||||| |||    
T  28474580 gaaatggttggacaacacttctgatgatgcagcaaagtcacaaccagaaagagggcagtaacatggaaagtagatgcattcgtcttcatgcttcctattt 28474481  T
Q  207 ccactttgacttattt 222  Q
    ||| | | ||||||||    
T  28474480 ccagtgtaacttattt 28474465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 32710008 - 32709811
Alignment:
Q  8 ttcctcttgaagaacagcagcttcatcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccatgtttatggttg 107  Q
    ||||||||||||||||   ||||| |||||| | || || |||||| |||||||||||||||||||||||  | || || | |||   ||||||||| ||    
T  32710008 ttcctcttgaagaacaatggcttcgtcattaaactttaaggagacaatgaaggagtgaccataagaaaatgtgctttgaaaatccttgtgtttatggctg 32709909  T
Q  108 aaatggttggacaacacttctaatgaggcaacaaaatcacaacctttaacgggacagtaacatggcacatagatgcattcttcttcatgtttcctctt 205  Q
    ||||| ||||||||||||||| ||||||||||||| |||||||||  || ||||||||||||||||||||| || |||||||||||||| ||| ||||    
T  32709908 aaatgattggacaacacttctgatgaggcaacaaagtcacaacctgaaaggggacagtaacatggcacatacatacattcttcttcatgcttcttctt 32709811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 25469401 - 25469195
Alignment:
Q  1 catcattttcctcttgaagaacagcagcttcatcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccatgttt 100  Q
    |||| |||| ||||||||||||| | | |||||||||||||||||| |||||| ||||||||||| ||||||||||||   || |||| ||||| |||||    
T  25469401 catcgtttttctcttgaagaacaacggtttcatcattagaattcaaggagacaatgaaggagtgatcataagaaaatttattttgagaatccccgtgttt 25469302  T
Q  101 atggttgaaatggttggacaacacttctaatgaggcaacaaaatcacaacctttaacgggacagtaacatggcacatagatgcattcttcttcatgtttc 200  Q
     ||| | |||||| |||||| ||||||| |||| ||||| || |||||||||  || ||| |||||||||||| ||||||| ||||||| |||||| |||    
T  25469301 ttggctaaaatggctggacagcacttctgatgatgcaacgaagtcacaacctgaaaaggggcagtaacatggctcatagatacattctttttcatgcttc 25469202  T
Q  201 ctctttc 207  Q
    || ||||    
T  25469201 ctatttc 25469195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 32762826 - 32762625
Alignment:
Q  1 catcattttcctcttgaagaacagcagcttcatcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccatgttt 100  Q
    ||||||||||||||||||| |||   | |||||||||||| ||||| |||||| ||||||||  |||||||||||||| |||  |||| ||||  |||||    
T  32762826 catcattttcctcttgaaggacaatggtttcatcattagacttcaaggagacaatgaaggagccaccataagaaaatttgatgtgagaatccctgtgttt 32762727  T
Q  101 atggttgaaatggttggacaacacttctaatgaggcaacaaaatcacaacctttaacgggacagtaacatggcacatagatgcattcttcttcatgtttc 200  Q
    |||| ||| ||||||||||||||||||| |||| ||| |||| |||||||||  || ||| ||||||||| |  | ||||||||||| |||||||| |||    
T  32762726 atggctgacatggttggacaacacttctgatgatgcagcaaagtcacaacctgaaagggggcagtaacatagttcgtagatgcattcctcttcatgcttc 32762627  T
Q  201 ct 202  Q
    ||    
T  32762626 ct 32762625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 32662233 - 32662435
Alignment:
Q  7 tttcctcttgaagaacagcagcttcatcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccatgtttatggtt 106  Q
    |||||||||||| ||||   | |||||||||||| || |   ||||| | |||||||||||||||||||||| |||  |||| ||||| ||||||| | |    
T  32662233 tttcctcttgaaaaacaatggtttcatcattagacttgatgtagacaattaaggagtgaccataagaaaatttgatatgagaatccccgtgtttatcgct 32662332  T
Q  107 gaaatggttggacaacacttctaatgaggcaacaaaatcacaacctttaacgggacagtaacatggcacatagatgcattcttcttcatgtttcctcttt 206  Q
    |||||| || |||||||||||| |||| |||||||| ||||| | |  ||| || ||| |||||||||||| |||||||||||||||||| |||||||||    
T  32662333 gaaatgcttagacaacacttctgatgatgcaacaaagtcacagcttgaaacagggcagcaacatggcacatggatgcattcttcttcatgcttcctcttt 32662432  T
Q  207 cca 209  Q
    |||    
T  32662433 cca 32662435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 32656346 - 32656546
Alignment:
Q  7 tttcctcttgaagaacagcagcttcatcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccatgtttatggtt 106  Q
    |||||||||||| ||||   | |||||| ||||| ||||| |||||| ||||||||| |||||||||||||| |||| |||| |||   ||||||| | |    
T  32656346 tttcctcttgaaaaacaatggtttcatccttagacttcaaggagacattgaaggagtcaccataagaaaatttgatttgagaatccttgtgtttatcgct 32656445  T
Q  107 gaaatggttggacaacacttctaatgaggcaacaaaatcacaacctttaacgggacagtaacatggcacatagatgcattcttcttcatgtttcctcttt 206  Q
    |||||| || |||||||||||  |||| ||||||||  |||||| |  ||  ||||||||||| ||||||| ||||||||||| |||||| |||||||||    
T  32656446 gaaatgcttagacaacacttcggatgatgcaacaaagccacaacttgaaataggacagtaacagggcacatggatgcattctttttcatgattcctcttt 32656545  T
Q  207 c 207  Q
    |    
T  32656546 c 32656546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 32739916 - 32739721
Alignment:
Q  1 catcattttcctcttgaagaacagcagcttcatcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccatgttt 100  Q
    |||||||||||||| ||||||||   | |||||||||||| ||||| |||| |  |||||| ||||||| |||||||| |||| | || |||||||||||    
T  32739916 catcattttcctctcgaagaacaatggtttcatcattagacttcaaggagataacgaaggattgaccattagaaaatttgatttgcgaatccccatgttt 32739817  T
Q  101 atggttgaaatggttggacaacacttctaatgaggcaacaaaatcacaacctttaacgggacagtaacatggcacatagatgcattcttcttcatg 196  Q
    ||||  ||||||  | |||||||||||| ||||  ||||||| ||||| |||  || ||||||||||||||||  || ||||||||| | ||||||    
T  32739816 atggcagaaatgcatagacaacacttctgatgattcaacaaagtcacatcctgaaaagggacagtaacatggcttatggatgcattcgttttcatg 32739721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 32767726 - 32767526
Alignment:
Q  1 catcattttcctcttgaagaacagcagcttcatcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccatgttt 100  Q
    ||||||||||||| |||||||||   |||| |||||| || || || |||||| |||||||||||||||||  ||||| |||| |||| | ||  |||||    
T  32767726 catcattttcctcctgaagaacaatggcttgatcattggactttaaggagacaatgaaggagtgaccataattaaatttgatttgagaattccggtgttt 32767627  T
Q  101 atggttgaaatggttggacaacacttctaatgaggcaacaaaatcacaacctttaacgggacagtaacatggcacatagatgcattcttcttcatgtttc 200  Q
      || ||||||||||||||||||||||| |||  ||| ||||  ||||||||  || ||| ||||||||| | || || |||||||| |||||||| |||    
T  32767626 tcggctgaaatggttggacaacacttctgatgttgcagcaaagccacaacctaaaatggggcagtaacatagtacgtatatgcattcgtcttcatgcttc 32767527  T
Q  201 c 201  Q
    |    
T  32767526 c 32767526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 222
Target Start/End: Original strand, 32652120 - 32652306
Alignment:
Q  36 ttagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccatgtttatggttgaaatggttggacaacacttctaatgagg 135  Q
    ||||| ||||| |||||| ||||||| ||||||||| |||||| |||| |||  ||||  ||||||| | ||||||| ||  ||| ||||||| |||| |    
T  32652120 ttagacttcaaggagacaatgaaggaatgaccataaaaaaatttgatttgagtatccctttgtttattgctgaaatgcttatacagcacttctgatgatg 32652219  T
Q  136 caacaaaatcacaacctttaacgggacagtaacatggcacatagatgcattcttcttcatgtttcctctttccactttgacttattt 222  Q
    ||||||| | ||||| |  ||| || |||||||||||| ||| ||||||||||| ||||||  ||||||||||| | | ||||||||    
T  32652220 caacaaagtgacaacttggaacagggcagtaacatggcgcatggatgcattctttttcatgcctcctctttccaatgtaacttattt 32652306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 32858075 - 32857961
Alignment:
Q  1 catcattttcctcttgaagaacagcagcttcatcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccatgttt 100  Q
    |||||||||||| ||||||||||   | |||| | ||||| ||||| |||||| |||||||||||||||| ||||||| |||| |||| ||||  |||||    
T  32858075 catcattttccttttgaagaacaatggtttcaactttagacttcaaggagacaatgaaggagtgaccatacgaaaattggatttgagaatccctgtgttt 32857976  T
Q  101 atggttgaaatggtt 115  Q
    |  | ||||||||||    
T  32857975 aaagctgaaatggtt 32857961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 32857953 - 32857863
Alignment:
Q  135 gcaacaaaatcacaacctttaacgggacagtaacatggcacatag---atgcattcttcttcatgtttcctctttccactttgacttattt 222  Q
    |||||||| |||||||||  || ||| |||||||||||| |||||   | ||||||||||||||| || ||||||||| | | ||||||||    
T  32857953 gcaacaaagtcacaacctgaaagggggcagtaacatggctcatagtagaagcattcttcttcatgcttactctttccagtgtaacttattt 32857863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 7970168 - 7970373
Alignment:
Q  3 tcattttcctcttgaagaacagcagcttcatcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccatgtttat 102  Q
    |||||||||||||||||||||   | |||| |||||||  |||| |||||| ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  7970168 tcattttcctcttgaagaacaatggtttcaccattagacatcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttat 7970267  T
Q  103 ggttgaaatggttggacaacacttctaatgaggcaacaaaatcacaacctttaacgggacagtaacatggcacatagatgcattcttcttcatgtttcct 202  Q
    || ||||||||||||||||||||||| |||| |||||||| |||||||||  || ||||||||||||||| ||||||||||||||||||||||| |||||    
T  7970268 ggctgaaatggttggacaacacttctgatgacgcaacaaagtcacaacctgaaaggggacagtaacatggtacatagatgcattcttcttcatgcttcct 7970367  T
Q  203 ctttcc 208  Q
     |||||    
T  7970368 atttcc 7970373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 37576935 - 37576724
Alignment:
Q  11 ctcttgaagaacagcagcttcatcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccatgtttatggttgaaa 110  Q
    |||||||||||||  || |||||||||||| ||||| |||||| | | |||  ||||||||||||| | | |  |||| ||||| ||||||||| |||||    
T  37576935 ctcttgaagaacaatagtttcatcattagacttcaaggagacaataacggacagaccataagaaaacttggtctgagaatccccgtgtttatggctgaaa 37576836  T
Q  111 tggttggacaacacttctaatgaggcaacaaaatcacaacctttaacgggacagtaacatggcacatagatgcattcttcttcatgtttcctctttccac 210  Q
    || || |||||||||||| |||| |||||||| |||||| ||   |  || |||||||| ||| ||| |||||||| ||||||||| ||| ||||||||     
T  37576835 tgcttagacaacacttctgatgatgcaacaaagtcacaatctggcagagggcagtaacacggctcatggatgcattgttcttcatggttcatctttccaa 37576736  T
Q  211 tttgacttattt 222  Q
    | | ||||||||    
T  37576735 tgtaacttattt 37576724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 17591233 - 17591032
Alignment:
Q  1 catcattttcctcttgaagaacagcagcttcatcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccatgttt 100  Q
    |||||||||||||||||||||||  |  |||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||| ||| |||||||||||    
T  17591233 catcattttcctcttgaagaacaataatttcatcattagacttcaaggagacagtgaaggagtaaccataagaaaatttgattatagaatccccatgttt 17591134  T
Q  101 atggttgaaatggttggacaacacttctaatgaggcaacaaaatcacaacctttaacgggacagtaacatggcacatagatgcattcttcttcatgtttc 200  Q
    |||  ||||||||||||||||||||||| |||| ||| |||| ||||| |||  || ||| ||||||||| | || |||| ||||||||||||||| |||    
T  17591133 atgcctgaaatggttggacaacacttctgatgatgcagcaaagtcacatcctgaaagggggcagtaacatagtacgtagacgcattcttcttcatgcttc 17591034  T
Q  201 ct 202  Q
    ||    
T  17591033 ct 17591032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 17583326 - 17583125
Alignment:
Q  1 catcattttcctcttgaagaacagcagcttcatcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccatgttt 100  Q
    |||||||||||||||||||||||   | |||||||||||| ||||  |||||||||||||| |||||||||||||||| |||| |||| || ||||||||    
T  17583326 catcattttcctcttgaagaacaatggtttcatcattagacttcatggagacagtgaaggactgaccataagaaaatttgatttgagaatcaccatgttt 17583227  T
Q  101 atggttgaaatggttggacaacacttctaatgaggcaacaaaatcacaacctttaacgggacagtaacatggcacatagatgcattcttcttcatgtttc 200  Q
    |||| |||| ||||||||||||| |||| | || ||| |||| ||||| |||  || ||| |||| |||||| || |||||||||| ||||||||| |||    
T  17583226 atggctgaagtggttggacaacaattctgacgatgcagcaaagtcacatcctgaaagggggcagtcacatggtacgtagatgcatttttcttcatgcttc 17583127  T
Q  201 ct 202  Q
    ||    
T  17583126 ct 17583125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 16752301 - 16752097
Alignment:
Q  1 catcattttcctcttgaagaacagcagcttcatcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccatgttt 100  Q
    |||||| || ||||||||||| |   || ||||||| ||| ||||| |||||| |||| || |||||||||||||||| |||| |||| ||| | |||||    
T  16752301 catcatatttctcttgaagaataattgcatcatcatcagacttcaaggagacaatgaaagattgaccataagaaaatttgatttgagaatcctcgtgttt 16752202  T
Q  101 atggttgaaatggttggacaacacttctaatgaggcaacaaaatcacaacctttaacgggacagtaacatggcacatagatgcattcttcttcatgtttc 200  Q
    || | ||||||||||||||||||| ||| |||||||||||||||||||||||  || ||| || |||||||| ||||||||||||| ||||||||| |||    
T  16752201 attgctgaaatggttggacaacacctctgatgaggcaacaaaatcacaacctgaaatggggcaataacatgggacatagatgcatttttcttcatgcttc 16752102  T
Q  201 ctctt 205  Q
     ||||    
T  16752101 gtctt 16752097  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 66 - 205
Target Start/End: Complemental strand, 16756717 - 16756578
Alignment:
Q  66 ccataagaaaattcgattagagagtccccatgtttatggttgaaatggttggacaacacttctaatgaggcaacaaaatcacaacctttaacgggacagt 165  Q
    |||||| |||| | |||| |||| ||| | ||||||||| ||||||||| ||||||||| ||| |||| |||||||| |||||||||  || ||| || |    
T  16756717 ccataataaaaattgatttgagaatcctcgtgtttatggctgaaatggtcggacaacacctctgatgaagcaacaaagtcacaacctgaaagggggcaat 16756618  T
Q  166 aacatggcacatagatgcattcttcttcatgtttcctctt 205  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  16756617 aacatggcacatagatgcattcttcttcatgcttcctctt 16756578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 21524376 - 21524166
Alignment:
Q  1 catcattttcctcttgaagaacagcagcttcatcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccatgttt 100  Q
    |||||||||||||||||||||||   | |||| | ||||| ||||| |||||| |||||||||| ||||| ||||||| |||| |||| ||||  |||||    
T  21524376 catcattttcctcttgaagaacaatggtttcaactttagacttcaaggagacaatgaaggagtggccatacgaaaatttgatttgagaatccctgtgttt 21524277  T
Q  101 atggttgaaatggttggacaacacttctaatgaggcaacaaaatcacaacctttaacgggacagtaacatggcaca---tagatgcattcttcttcatgt 197  Q
    |  | |||||||||| |||||||||||| |||| |||||||| |||||||||  || ||| |||||||||||| ||   |||| |||||||||||||||     
T  21524276 aaagctgaaatggtttgacaacacttctgatgatgcaacaaagtcacaacctgaaagggggcagtaacatggctcatagtagaagcattcttcttcatgc 21524177  T
Q  198 ttcctctttcc 208  Q
    || ||||||||    
T  21524176 ttactctttcc 21524166  T

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