View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1789_high_37 (Length: 234)

Name: NF1789_high_37
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1789_high_37
NF1789_high_37
[»] chr7 (2 HSPs)
chr7 (29-184)||(5777200-5777358)
chr7 (102-173)||(28842628-28842699)
[»] scaffold0113 (1 HSPs)
scaffold0113 (29-184)||(3280-3435)
[»] chr2 (4 HSPs)
chr2 (118-204)||(38875901-38875987)
chr2 (29-126)||(38877079-38877176)
chr2 (115-211)||(38872745-38872840)
chr2 (67-116)||(38873131-38873180)
[»] chr8 (1 HSPs)
chr8 (62-166)||(25937884-25937988)
[»] chr1 (1 HSPs)
chr1 (57-173)||(30093027-30093143)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 5777358 - 5777200
Alignment:
Q  29 caactctccaaaccaagatgtcctccttgactagacgaaaaagaggagtcctaagaatttcctgaacagattcttgatcaaaataataattaattatatt 128  Q
    ||||||||||||||||  ||||||| | |||| |||| ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  5777358 caactctccaaaccaatgtgtcctcttcgacttgacggaaaagaggagtcctaagaatttcatgaacaatttcttgatcaaaataataattaattatatt 5777259  T
Q  129 atcattccaacaattatta---ttatgatcaatgagagaatgcactctcatttgctgaa 184  Q
    ||| |||||| ||||||||   ||||||||||||||||||||||||||| |||||||||    
T  5777258 atcgttccaaaaattattattattatgatcaatgagagaatgcactctcgtttgctgaa 5777200  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 28842628 - 28842699
Alignment:
Q  102 ttgatcaaaataataattaattatattatcattccaacaattattattatgatcaatgagagaatgcactct 173  Q
    |||||||||||| |||||||| | || || |||||||  ||||||||| ||||||||||||||||| |||||    
T  28842628 ttgatcaaaatagtaattaatcaaatgataattccaattattattattgtgatcaatgagagaatgaactct 28842699  T

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Target: scaffold0113 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 3280 - 3435
Alignment:
Q  29 caactctccaaaccaagatgtcctccttgactagacgaaaaagaggagtcctaagaatttcctgaacagattcttgatcaaaataataattaattatatt 128  Q
    ||||||||||||||||  ||||||| |||||| |||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  3280 caactctccaaaccaatttgtcctctttgacttgacgaaaaagaggagtgctatgaatttcctgaacagtttcttgatcaagataataattaattatatt 3379  T
Q  129 atcattccaacaattattattatgatcaatgagagaatgcactctcatttgctgaa 184  Q
    || || |||||| ||||| ||||||||||||||||||||| ||||  |||||||||    
T  3380 ataataccaacagttattgttatgatcaatgagagaatgccctcttgtttgctgaa 3435  T

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Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 38875987 - 38875901
Alignment:
Q  118 ttaattatattatcattccaacaattattattatgatcaatgagagaatgcactctcatttgctgaattacaaaaagaggtggtttt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38875987 ttaattatattatcattccaacaattattattatgatcaatgagagaatgcactctcatttgctgaattacaaaaagaggtggtttt 38875901  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 38877176 - 38877079
Alignment:
Q  29 caactctccaaaccaagatgtcctccttgactagacgaaaaagaggagtcctaagaatttcctgaacagattcttgatcaaaataataattaattata 126  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  38877176 caactctccaaaccaagctgtcctccttgactagacgaaaaagaggagtcctaagaattttctgaatagattcttgatcaaaataataattaattata 38877079  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 38872840 - 38872745
Alignment:
Q  115 taattaattatattatcattccaacaattattattatgatcaatgagagaatgcactctcatttgctgaattacaaaaagaggtggtttttatcata 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||  |||||||||||||||||||||    
T  38872840 taattaattatattatcattccaacaattattattatgatcaatgagagaatgcacggtcatttgctgaatcac-caaagaggtggtttttatcata 38872745  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 38873180 - 38873131
Alignment:
Q  67 aaaagaggagtcctaagaatttcctgaacagattcttgatcaaaataata 116  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  38873180 aaaagaggagtcctaggaatttcctgaacagatttttgatcaaaataata 38873131  T

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Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 25937988 - 25937884
Alignment:
Q  62 gacgaaaaagaggagtcctaagaatttcctgaacagattcttgatcaaaataataattaattatattatcattccaacaattattattatgatcaatgag 161  Q
    ||||||| ||||||||| ||||||||||||| ||||  ||||||||||||||||||||||| |  | ||  |||||||||||||||||||||||||||||    
T  25937988 gacgaaacagaggagtcttaagaatttcctggacagtgtcttgatcaaaataataattaatcaagtgatagttccaacaattattattatgatcaatgag 25937889  T
Q  162 agaat 166  Q
    |||||    
T  25937888 agaat 25937884  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 173
Target Start/End: Original strand, 30093027 - 30093143
Alignment:
Q  57 gactagacgaaaaagaggagtcctaagaatttcctgaacagattcttgatcaaaataataattaattatattatcattccaacaattattattatgatca 156  Q
    |||| |||||| |||||||||| || |||||||||| ||||  |||||||||||||| |||||||| | || ||  ||||||| ||||||||| ||||||    
T  30093027 gacttgacgaacaagaggagtcttacgaatttcctggacagtgtcttgatcaaaatagtaattaatcaaatgatagttccaactattattattgtgatca 30093126  T
Q  157 atgagagaatgcactct 173  Q
    | |||||| || |||||    
T  30093127 acgagagattgaactct 30093143  T

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