View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1789_high_39 (Length: 226)

Name: NF1789_high_39
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1789_high_39
NF1789_high_39
[»] chr3 (1 HSPs)
chr3 (9-211)||(43682961-43683164)
[»] chr1 (3 HSPs)
chr1 (82-211)||(28956688-28956807)
chr1 (9-88)||(21914528-21914608)
chr1 (9-56)||(28956630-28956678)
[»] chr4 (1 HSPs)
chr4 (16-88)||(34857130-34857203)
[»] chr7 (3 HSPs)
chr7 (141-211)||(7569935-7570000)
chr7 (141-211)||(7576350-7576415)
chr7 (24-61)||(36223167-36223204)
[»] chr6 (1 HSPs)
chr6 (20-79)||(12986717-12986776)
[»] chr2 (2 HSPs)
chr2 (16-58)||(16880612-16880652)
chr2 (16-58)||(17038302-17038342)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 43682961 - 43683164
Alignment:
Q  9 gaagaatatataagtgccagagccatataaaaaag-ggggcgctacacaacagcctggtattcacgttttggacattcacgttttggggaacaaggctga 107  Q
    |||||| |||||||| ||||||||||||||||| | |||||||||||||||| | |||||||||| || ||||||||||||||||||||||||||||||     
T  43682961 gaagaaaatataagttccagagccatataaaaaggaggggcgctacacaacaacatggtattcactttctggacattcacgttttggggaacaaggctgg 43683060  T
Q  108 atcacaatttggagatgctctgtgaaaaaggtggagaacgagctacacacatcggtgggaaaacaacaataggagaggagactaagaaattcatgagtat 207  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  43683061 atcacaatttggagacgctctgtgaaaaaggtggagaacgagctacacacatcggtgggaaaacaacaacacgagaggagactaagaaattcatgagtat 43683160  T
Q  208 tttc 211  Q
    ||||    
T  43683161 tttc 43683164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 211
Target Start/End: Original strand, 28956688 - 28956807
Alignment:
Q  82 attcacgttttggggaacaaggctgaatcacaatttggagatgctctgtgaaaaaggtggagaacgagctacacacatcggtgggaaaacaacaatagga 181  Q
    |||||||||||||||||||||| || ||||| |||||||||          |||||||||| ||||||||||| ||||||||||||||||||||| ||||    
T  28956688 attcacgttttggggaacaaggttggatcactatttggaga----------aaaaggtggaaaacgagctacatacatcggtgggaaaacaacaacagga 28956777  T
Q  182 gaggagactaagaaattcatgagtattttc 211  Q
    ||||||||||||||||||||||||||||||    
T  28956778 gaggagactaagaaattcatgagtattttc 28956807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 21914608 - 21914528
Alignment:
Q  9 gaagaatatataagtgccagagccatataaaaa-agggggcgctacacaacagcctggtattcacgttttggacattcacg 88  Q
    |||||| ||||||||||||||||||||||||||   |||| ||| |||||||||||||| |||||||| | ||||||||||    
T  21914608 gaagaaaatataagtgccagagccatataaaaagtaggggtgcttcacaacagcctggttttcacgttctagacattcacg 21914528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 28956630 - 28956678
Alignment:
Q  9 gaagaatatataagtgccagagccatataaaaa-agggggcgctacaca 56  Q
    |||||| |||||||||| ||||||||||||||| | |||||||||||||    
T  28956630 gaagaaaatataagtgcgagagccatataaaaagaaggggcgctacaca 28956678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 34857203 - 34857130
Alignment:
Q  16 atataagtgccagagccatataaaaaag-ggggcgctacacaacagcctggtattcacgttttggacattcacg 88  Q
    |||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| || |||||||||    
T  34857203 atataagtgccagagccatataaaaaggaggggcgctacataacagcctggtattcacgttctgtacattcacg 34857130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 7569935 - 7570000
Alignment:
Q  141 gagaacgagctacacacatcggtgggaaaacaacaataggagaggagactaagaaattcatgagtattttc 211  Q
    ||||||||| |||||||||| ||||||||||||||     | ||||||| |||||||||||||||||||||    
T  7569935 gagaacgagttacacacatcagtgggaaaacaaca-----acaggagacaaagaaattcatgagtattttc 7570000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 7576350 - 7576415
Alignment:
Q  141 gagaacgagctacacacatcggtgggaaaacaacaataggagaggagactaagaaattcatgagtattttc 211  Q
    ||||||||| |||||||||| ||||||||||||||     | ||||||| |||||||||||||||||||||    
T  7576350 gagaacgagttacacacatcagtgggaaaacaaca-----acaggagacaaagaaattcatgagtattttc 7576415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 36223204 - 36223167
Alignment:
Q  24 gccagagccatataaaaaagggggcgctacacaacagc 61  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  36223204 gccagagccatataaaaagaggggcgctacacaacagc 36223167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 12986776 - 12986717
Alignment:
Q  20 aagtgccagagccatataaaaaagggggcgctacacaacagcctggtattcacgttttgg 79  Q
    ||||||||||||||||||||||  |||| |||||||||||||  |  |||||||||||||    
T  12986776 aagtgccagagccatataaaaagaggggtgctacacaacagcaggacattcacgttttgg 12986717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 16880612 - 16880652
Alignment:
Q  16 atataagtgccagagccatataaaaaagggggcgctacacaac 58  Q
    ||||||||||||||||||||||||||  |||||||||||||||    
T  16880612 atataagtgccagagccatataaaaa--ggggcgctacacaac 16880652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 17038302 - 17038342
Alignment:
Q  16 atataagtgccagagccatataaaaaagggggcgctacacaac 58  Q
    ||||||||||||||||||||||||||  |||||||||||||||    
T  17038302 atataagtgccagagccatataaaaa--ggggcgctacacaac 17038342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University