View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_high_8 (Length: 363)
Name: NF1789_high_8
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 33397247 - 33397591
Alignment:
| Q |
18 |
cttacggcatgtaagtgagaaagaattcaaagttggtctctgacgtattgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacc |
117 |
Q |
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| T |
33397247 |
cttacggcatgtaagtgagaaagaattcaaagttggtctctgacatattgcagaagcaagaccatcatgtgatagcaaatggcattggaacataaccaac |
33397346 |
T |
|
| Q |
118 |
tcttgtagaaacacacagttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagctttt |
217 |
Q |
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| T |
33397347 |
tcttgtagaaacacacagttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagctttt |
33397446 |
T |
|
| Q |
218 |
gagtgagaagcttcagagcattattataattgtcgctgtcattggtgattattttagggtaactgatatccaattgttggaggaaagggaaggaatcggc |
317 |
Q |
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| T |
33397447 |
gagtgagaagcttcaaagcattattataattgtcactgtcattggtgattattttagggtaactgatatccaattgttggaggaaagggaaggaatcggc |
33397546 |
T |
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| Q |
318 |
aatgaaggatatgtcagtatggcatagagagacgatgttggaaca |
362 |
Q |
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| T |
33397547 |
aatgaaggatatgtcagtatggtatagagagccgatgttggaaca |
33397591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 160 - 363
Target Start/End: Original strand, 36876466 - 36876678
Alignment:
| Q |
160 |
gagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaagcttcagagcattattataattgtcgctgt--- |
256 |
Q |
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| T |
36876466 |
gagtcattaatgtagaaattaccagagaaattaaccttgcgaagttttgaaagcctttgagtaagaagctttagagcattattataagtgtcagtgtcgt |
36876565 |
T |
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| Q |
257 |
---catt---ggtgattattttagggtaactgatatccaattgttggaggaaagggaaggaatcggcaatgaaggatatgtcagtatggcatagagagac |
350 |
Q |
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| T |
36876566 |
agccattaccggttattgttttggggaaactgatatccagttgttggaggaaaggaaaagaatgagcaatgaaggatatgtcagtatggtatagagagcc |
36876665 |
T |
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| Q |
351 |
gatgttggaacat |
363 |
Q |
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|||||||||||| |
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| T |
36876666 |
aatgttggaacat |
36876678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 34 - 347
Target Start/End: Complemental strand, 27005101 - 27004788
Alignment:
| Q |
34 |
gagaaagaattcaaagttggtctctgacgtattgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacac |
133 |
Q |
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||||||||||||||||| |||||||| ||||||||||||| ||||||| ||| ||| || ||||| | |||||||| || | |||||||||| || |
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| T |
27005101 |
gagaaagaattcaaagtgggtctctggtagattgcagaagcaataccatcatgtgttaggaattggcaatcgaacataaaaacttgttgtagaaacttac |
27005002 |
T |
|
| Q |
134 |
agttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaagcttcag |
233 |
Q |
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|||| | ||| | | ||||||| |||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || |
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| T |
27005001 |
agttgacacatagttgaaaaaacaaagagtcattaaagtaggaatgaccagagagattaacattgcggagttttgaaagcttttgagtaagaagctgtag |
27004902 |
T |
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| Q |
234 |
agcattattataattgtcgctgtcattggtgattattttagggtaactgatatccaattgttggaggaaagggaaggaatcggcaatgaaggatatgtca |
333 |
Q |
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| T |
27004901 |
agcattgtaataagcatgagcattaccagatattgttttagggaaactgatatccaattgttggaggaaggggaatgaatctgcgatcaaggatatgtga |
27004802 |
T |
|
| Q |
334 |
gtatggcatagaga |
347 |
Q |
| |
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| T |
27004801 |
gtgtggcatagaga |
27004788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 33093125 - 33093071
Alignment:
| Q |
166 |
ttaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgag |
220 |
Q |
| |
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||||| ||||||| ||| |||||||||||||||||||||||| |||||||||||| |
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| T |
33093125 |
ttaacatagaaattacctgagagattaaccttgcggagttttaaaagcttttgag |
33093071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 207
Target Start/End: Complemental strand, 36810353 - 36810180
Alignment:
| Q |
34 |
gagaaagaattcaaagttggtctctgacgtattgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacac |
133 |
Q |
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|||| |||||||||||| |||||||| | ||||||| ||||| |||| |||||| ||| ||| |||| | ||||||||||||||||| || || | ||| |
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| T |
36810353 |
gagagagaattcaaagtgggtctctggcaaattgcagtagcaataccagcacgtgttaggaaagggcaatcgaacataaccacctcttctaaaagctcac |
36810254 |
T |
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| Q |
134 |
agttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagtttt |
207 |
Q |
| |
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||||| | |||| | ||||| || |||| || ||||||| ||||||||| ||||||||| |||||||| |
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| T |
36810253 |
agttcctgcacagttccaaaaacaatgaatcatcaatatagaaattaccagagaggttaaccttgtggagtttt |
36810180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 37580008 - 37579955
Alignment:
| Q |
186 |
gagattaaccttgcggagttttgaaagcttttgagtgagaagcttcagagcatt |
239 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||| ||| |||||||| |
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| T |
37580008 |
gagattaaccttgcagagttttgaaagcttttgagtaagaacctttagagcatt |
37579955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 105 - 213
Target Start/End: Complemental strand, 33708281 - 33708173
Alignment:
| Q |
105 |
gaacataaccacctcttgtagaaacacacagttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagt |
204 |
Q |
| |
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|||||||| ||||||||| |||||| ||||||||||| | ||||||| |||||||| |||||| ||| ||| |||||||||||||| |||||| |
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| T |
33708281 |
gaacataagcacctcttggagaaacttgcagttcatacatagctgaaaaaacaatgagtcatttacgtaggaattaccggagagattaaccttacggagt |
33708182 |
T |
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| Q |
205 |
tttgaaagc |
213 |
Q |
| |
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||||||||| |
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| T |
33708181 |
tttgaaagc |
33708173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 213
Target Start/End: Complemental strand, 33714188 - 33714039
Alignment:
| Q |
64 |
attgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacacagttcatacacaatagaaaaaaggtggagt |
163 |
Q |
| |
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||||||||||||| |||| || ||| || || |||||| | ||||||||||||||| |||||| ||||||||||| | ||||||| |||| |
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| T |
33714188 |
attgcagaagcaataccagcatgtgttatggaacggcatttgtacataaccacctctttgagaaacttgcagttcatacatagctgaaaaaacaacgagt |
33714089 |
T |
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| Q |
164 |
cattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagc |
213 |
Q |
| |
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|||| || ||| ||| |||||||||||||||||| ||||||| ||||||| |
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| T |
33714088 |
catttacataggaattaccagagagattaaccttacggagttctgaaagc |
33714039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 18723643 - 18723550
Alignment:
| Q |
133 |
cagttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaa |
226 |
Q |
| |
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||||||||||||| | ||||||| || ||||||| ||||| || |||||| |||||||| |||||||||||||||||| ||||||| |||| |
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| T |
18723643 |
cagttcatacacagttgaaaaaacaatgaatcattaatgtagatattaccagaaagattaactttgcggagttttgaaagcctttgagtaagaa |
18723550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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