View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1789_low_10 (Length: 343)
Name: NF1789_low_10
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 325
Target Start/End: Complemental strand, 42803033 - 42802724
Alignment:
| Q |
16 |
atacaaggaactccatgttgccccccttgttgtcagcttgtaactagccctctctttattatatatctctataactttttctctcaattaatggaacgca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
42803033 |
atacaaggaactccatgttgccccccttgttgtcagcttgtaactagcactctctttattatatatctctaaaactttttctctcaattaatggaatgca |
42802934 |
T |
|
| Q |
116 |
ttccatttatgttgctaatatttctttctttaaacgaatgcattccattggagtatatatctttctttaaaattaatggaatgcactctttctgcttaat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42802933 |
ttccatttatgttgctaatatttctttctttaaacgaatgcattccattggagtatatatctttctttaaaatcaatggaatgcactctttctgcttaat |
42802834 |
T |
|
| Q |
216 |
cagatattttggatttgaatccagccttgagaatgaaacagtgttaaatcttttatctcttgaatgagagttttatcatctattacagttattcgataca |
315 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||| | || |||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
42802833 |
cagatattttgggtttgaatccagccttgagaatgaaacaatgttaaatttcttgtctcttgaatgagagttttatcatctattacagttactcgattca |
42802734 |
T |
|
| Q |
316 |
atgaattagt |
325 |
Q |
| |
|
|||||||||| |
|
|
| T |
42802733 |
atgaattagt |
42802724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University