View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_low_11 (Length: 329)
Name: NF1789_low_11
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 12804335 - 12804644
Alignment:
| Q |
18 |
gaatcaacaaaggatcagagagaaaatatagctgaagctgaaccttatgcagatcaaagtagtccaagttcagatgtggagactgaattgttcattggtc |
117 |
Q |
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| T |
12804335 |
gaatcaacaaaggatcagagagaaaatatagctgaagctgaaccttatgcagatcaaagtagtccaagttcagatgtggagactgaattgttcattggtc |
12804434 |
T |
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| Q |
118 |
ttccagaaacaagatcaaggcgcatttctccaaaggtgtagctagttgag-------------atgactatgcaattgaaaataagggtgaggcaaatgt |
204 |
Q |
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| T |
12804435 |
ttccagaaacaagatcaaggcgcatttctccaaaggtgtagctagtttaggattaattaatccatgactatgcaattgaaaataagggtgaggcaaatgt |
12804534 |
T |
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| Q |
205 |
ctcatcaatgcatattggaaatgtttccttaattatgctctcattcaaataagtggtgaattgtgagagtattgacacttttatggttgtattttcattc |
304 |
Q |
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| T |
12804535 |
ctcatcaatgtatattggatatgtttccttaattatgctctcattcaaataagtggtgaattgtgagagtattgacacttttatggttgtattttca--- |
12804631 |
T |
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| Q |
305 |
aaacctatgtctgt |
318 |
Q |
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||||||||||||| |
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| T |
12804632 |
-aacctatgtctgt |
12804644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 12780849 - 12780994
Alignment:
| Q |
22 |
caacaaaggatcagagagaaaatatagctgaagctgaaccttatgcagatcaaagtagtccaagttcagatgtggagactgaattgttcattggtcttcc |
121 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12780849 |
caacaaaggatcagagagaaaatatagttgaagctgaaacttatgcagatcaaagtagtccaagttcagatgtggaaactgaattgttcattggtcttcc |
12780948 |
T |
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| Q |
122 |
agaaacaagatcaaggcgcatttctccaaaggtgtagctagttgag |
167 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12780949 |
agaaacaagaacaaggcgcatttctccaaaggtgtagctagttgag |
12780994 |
T |
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