View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_low_13 (Length: 309)
Name: NF1789_low_13
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 50421008 - 50421287
Alignment:
| Q |
13 |
gagacagatattaaaatcgccaagcgttatgtagatcatgtgtttgttttaaagcttcttgacttgtttgattcggaggatcaacgcgagcgcgagtatt |
112 |
Q |
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| T |
50421008 |
gagacagatattaaaatcgccaagcgttatgtagatcatgtgtttgttttaaagcttcttgacttgtttgattcggaggatcaacgcgagcgcgagtatt |
50421107 |
T |
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| Q |
113 |
tgaagacgattgttcataggatttatgggaagtttatgattcatagaccatttataagaaaggctattaacaatatcttttatcgttttatatttgaaac |
212 |
Q |
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| T |
50421108 |
tgaagacgattgttcataggatttatgggaagtttatggttcatagaccatttataagaaaggctattaacaatatcttttatcgttttatatttgaaac |
50421207 |
T |
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| Q |
213 |
gcagaggcataatggtatttgtgaattgcttgagattatggctagtattataaatggctttgctttacctatgaaagagg |
292 |
Q |
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| T |
50421208 |
gcagaggcataatggtatttgtgaattgcttgagattatggctagtattataaatggctttgctttacctatgaaagagg |
50421287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 292
Target Start/End: Complemental strand, 27639810 - 27639600
Alignment:
| Q |
82 |
gattcggaggatcaacgcgagcgcgagtatttgaagacgattgttcataggatttatgggaagtttatgattcatagaccatttataagaaaggctatta |
181 |
Q |
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| T |
27639810 |
gattctgaggatcctcgtgagcgtgagtatttgaaaactattctgcatcgtatatatggaaaattcatggttcatagaccgtttattagaaaagcaatta |
27639711 |
T |
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| Q |
182 |
acaatatcttttatcgttttatatttgaaacgcagaggcataatggtatttgtgaattgcttgagattatggctagtattataaatggctttgctttacc |
281 |
Q |
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| T |
27639710 |
acaatattttttatcggtttatatatgagactgagcgacactgtggtattggggagcttttggagattttgggtagtattattaatgggtttgctttgcc |
27639611 |
T |
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| Q |
282 |
tatgaaagagg |
292 |
Q |
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| T |
27639610 |
tatgaaagagg |
27639600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 212
Target Start/End: Original strand, 41351640 - 41351718
Alignment:
| Q |
134 |
tttatgggaagtttatgattcatagaccatttataagaaaggctattaacaatatcttttatcgttttatatttgaaac |
212 |
Q |
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| T |
41351640 |
tttatggaaaatttatggttcatagaccctttattaggaaggctattaataacatattttatcggtttatttatgaaac |
41351718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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