View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_low_15 (Length: 275)
Name: NF1789_low_15
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_low_15 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 114 - 275
Target Start/End: Complemental strand, 11326262 - 11326101
Alignment:
| Q |
114 |
cttctttacatgtaatacagtgatcaatccataacaagaatcattaataaattgatttacttgacattaggaatttaggaccaaattattggtttattct |
213 |
Q |
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| T |
11326262 |
cttctttacatgtaatacagtgaacaatccataacaagaatcattaataaattgatttacttgacattacgaatttaggaccaaattattggtttattct |
11326163 |
T |
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| Q |
214 |
tgaaacaaaacaatggatagaatgatttttatttacaagcaaatgcaaggataaactgatgt |
275 |
Q |
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| T |
11326162 |
tgaaacaaaacaatggatagaatgatttttatttacaagcaaatgcatggataaactgatgt |
11326101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 114 - 275
Target Start/End: Complemental strand, 11484283 - 11484122
Alignment:
| Q |
114 |
cttctttacatgtaatacagtgatcaatccataacaagaatcattaataaattgatttacttgacattaggaatttaggaccaaattattggtttattct |
213 |
Q |
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| T |
11484283 |
cttctttacatgtaatacagtgaacaatccataacaagaatcattaataaattgatttacttgacattacgaatttaggaccaaattattggtttattct |
11484184 |
T |
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| Q |
214 |
tgaaacaaaacaatggatagaatgatttttatttacaagcaaatgcaaggataaactgatgt |
275 |
Q |
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| T |
11484183 |
tgaaacaaaacaatggatagaatgatttttatttacaagcaaatgcatggataaactgatgt |
11484122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 11326357 - 11326286
Alignment:
| Q |
18 |
aatcatggaaatatggaattttggttctgcaagataggatggtttattgggaggtcaaacaatacaaaattg |
89 |
Q |
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| T |
11326357 |
aatcatggaaatatggaattttggttctgcaagataggatggtttattgggaggtcaaacaatacaaaattg |
11326286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 11484378 - 11484307
Alignment:
| Q |
18 |
aatcatggaaatatggaattttggttctgcaagataggatggtttattgggaggtcaaacaatacaaaattg |
89 |
Q |
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| T |
11484378 |
aatcatggaaatatggaattttggttctgcaagataggatggtttattgggaggtcaaacaatacaaaattg |
11484307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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