View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_low_17 (Length: 264)
Name: NF1789_low_17
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 23307497 - 23307746
Alignment:
| Q |
1 |
gtacacagtagcagctgttgctggatattggaatgttgcaacggataaacgactgtagctggaattcaccactgccctgtgatcagctttcttgaaccgt |
100 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23307497 |
gtacacagttgcatctgttgctggatattggaatgttgcaacggataaacgactgtagctggaattcaccactgccctgtgatcagctttcttgaaccgt |
23307596 |
T |
|
| Q |
101 |
ccattacttaaatactgcatgcaccatgggcaaattaacaaatatgagaaaataataattagtacgtctctaattataagaccttttcgaagnnnnnnnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| ||||||||||||| |||| |
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| T |
23307597 |
ccattacttaaatactgcatgcaccatgggcaaattaacaaatctgagaaaataataattagtacctccctaaatataagacctttttgaagaaaaaaaa |
23307696 |
T |
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| Q |
201 |
nttgttcatttttatgagatctctttgctctattcaactacattaattat |
250 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23307697 |
attgttcttttttatgagatctctttgctcttttcaactacattaattat |
23307746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 32067476 - 32067601
Alignment:
| Q |
1 |
gtacacagtagcagctgttgctggatattggaatgttgcaacggataaacgactgtagctggaattcaccactgccctgtgatcagctttcttgaaccgt |
100 |
Q |
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||||||||| ||| ||| |||||||| |||||||||||| | ||||||||| || ||| |||||||||||||||| ||||||||| || ||||||||| |
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| T |
32067476 |
gtacacagttgcatctggtgctggattttggaatgttgctatggataaacggctatagttggaattcaccactgcttggtgatcagcatttttgaaccgt |
32067575 |
T |
|
| Q |
101 |
ccattacttaaatactgcatgcacca |
126 |
Q |
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|||||||||| |||||||||| |||| |
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| T |
32067576 |
ccattacttagatactgcatgtacca |
32067601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 32090491 - 32090616
Alignment:
| Q |
1 |
gtacacagtagcagctgttgctggatattggaatgttgcaacggataaacgactgtagctggaattcaccactgccctgtgatcagctttcttgaaccgt |
100 |
Q |
| |
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||||||||| ||| ||| |||||||| |||||||||||| | ||||||||| || ||| |||||||||||||||| ||||||||| || ||||||||| |
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| T |
32090491 |
gtacacagttgcatctggtgctggattttggaatgttgctatggataaacggctatagttggaattcaccactgcttggtgatcagcatttttgaaccgt |
32090590 |
T |
|
| Q |
101 |
ccattacttaaatactgcatgcacca |
126 |
Q |
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|||||||||| |||||||||| |||| |
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| T |
32090591 |
ccattacttagatactgcatgtacca |
32090616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 32070445 - 32070566
Alignment:
| Q |
1 |
gtacacagtagcagctgttgctggatattggaatgttgcaacggataaacgactgtagc--tggaattcaccactgccctgtgatcagctttcttgaacc |
98 |
Q |
| |
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||||||||| | | ||| |||||||| |||||||||||| | |||||||| |||||| ||||||| |||||||| |||||||| || ||||||| |
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| T |
32070445 |
gtacacagttgaatctggtgctggattttggaatgttgctatggataaacagctgtagaattggaatttaccactgcttggtgatcaggatttttgaacc |
32070544 |
T |
|
| Q |
99 |
gtccattacttaaatactgcat |
120 |
Q |
| |
|
|||||||||||| | ||||||| |
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| T |
32070545 |
gtccattacttagaaactgcat |
32070566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 34895908 - 34895949
Alignment:
| Q |
209 |
tttttatgagatctctttgctctattcaactacattaattat |
250 |
Q |
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||||||| ||||||||||||| | |||||||||||||||||| |
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| T |
34895908 |
tttttataagatctctttgctattttcaactacattaattat |
34895949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 39184324 - 39184365
Alignment:
| Q |
209 |
tttttatgagatctctttgctctattcaactacattaattat |
250 |
Q |
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||||||| ||||||||||||| | |||||||||||||||||| |
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| T |
39184324 |
tttttataagatctctttgctattttcaactacattaattat |
39184365 |
T |
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