View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_low_19 (Length: 254)
Name: NF1789_low_19
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 45675224 - 45675446
Alignment:
| Q |
14 |
cacagattgagagaagtatcctttaacagaacaaaaggaggtaggaagaagnnnnnnnntagacataaaaaattaaagaacagtaacaaaacatgcaagt |
113 |
Q |
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| T |
45675224 |
cacagattgagagaagtatcctttaacagaacaaaaggaggtaggaagaagaaaaaaaatagacataaaaaattaaagaacagtaacaaaacatgcaagt |
45675323 |
T |
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| Q |
114 |
tcagacgttggacaaacaagttcagaggaatccatgggaccagacacaggggccatttcgtaatcatctactatgtagtgaactcactcggtgcttatct |
213 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45675324 |
tcagaagttggacaaacaagttcagaggaatccatgtgaccagacacaggggccatttcgtaatcatctactatgaagtgaactcactcggtgcttatct |
45675423 |
T |
|
| Q |
214 |
ctatatttccccttcccaaagat |
236 |
Q |
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||||||||||| ||||||||||| |
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| T |
45675424 |
ctatatttccctttcccaaagat |
45675446 |
T |
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