View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_low_20 (Length: 254)
Name: NF1789_low_20
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_low_20 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 7879589 - 7879503
Alignment:
| Q |
164 |
tttattcattgaataaagtctagcgttacgactttaagttgtaattgtatcaccatttaggatcattgggtgatttaatattgatgt |
250 |
Q |
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| T |
7879589 |
tttattcattgaataaagtctagtgttaagactataagttgcaattgtagcactatttaggatcgttgggtgatttaatattgatgt |
7879503 |
T |
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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 7909171 - 7909101
Alignment:
| Q |
41 |
attgtgcaagtcacagtttctctaaaacatgtgcataaagctttcccacagtgctaagacttcaagttgtgtta |
114 |
Q |
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| T |
7909171 |
attgtgcaagtcatagtttctctaaaacatgt--ataaagctttcc-acagtgctaagacttcaagttgtgtta |
7909101 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 48885113 - 48885047
Alignment:
| Q |
188 |
gttacgactttaagttgtaattgtatcaccatttaggatcattgggtgatttaatattgatgtttct |
254 |
Q |
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| T |
48885113 |
gttaagactttaagttataactgcagcactatttaggatcattgggtgatttaattttgatgtttct |
48885047 |
T |
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