View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_low_23 (Length: 253)
Name: NF1789_low_23
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 37976133 - 37975882
Alignment:
| Q |
1 |
tcaaccactagctttcgatctagtttaattgacacacatcgcttccatatatgtagttaatacgttgtgccatgtcgccttcgcttggataaaatatcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| | |
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| T |
37976133 |
tcaaccactagctttcgatctagtttaattgacacacatcacttccatagatgtagttaatccgctgtgccatgtcgccttcgcttggataaaatatcct |
37976034 |
T |
|
| Q |
101 |
attctatctcggatacacatacctattccaaaagaatgttgttcttggaacaacgttgtatccacattgcattctaattctcctcattgactgtggtagc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37976033 |
attctatctcggatacacatacctattccaaaagaatgttgttcttgaaacaacgttgtatccacattgcattctaattctcctcattgactgtggtagc |
37975934 |
T |
|
| Q |
201 |
catcatgccagatgaactgatacgctgcatggtttctccatgtcctcccata |
252 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37975933 |
catcatgccagatgaactgatacgctgcatggtttctccatgtcctcccata |
37975882 |
T |
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