View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_low_26 (Length: 250)
Name: NF1789_low_26
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 35915241 - 35915461
Alignment:
| Q |
13 |
aatatcaggtaataatgacacataagaagcaactaaatcagctacaaaaccctattgttgttgttttatcnnnnnnnattacacagagaaaagattttac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
35915241 |
aatatcaggtaataatgacacataagaagcaactaaatcagctacaaaaccctattgttgttattttatctttttttattacacaaagaaaagattttac |
35915340 |
T |
|
| Q |
113 |
ccgaatgtagttgcacccatcaatcaagcacaacacaacatagtacatacatagatagcactactaaatattgctcctaaaattttggtgctgacggtta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915341 |
ccgaatgtagttgcacccatcaatcaagcacaacacaacatagtacatacatagatagcactactaaatattgctcctaaaattttggtgctgacggtta |
35915440 |
T |
|
| Q |
213 |
caaacgtatggtagaatatac |
233 |
Q |
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||||||||||||||||||||| |
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| T |
35915441 |
caaacgtatggtagaatatac |
35915461 |
T |
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