View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_low_32 (Length: 237)
Name: NF1789_low_32
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 97 - 219
Target Start/End: Original strand, 29651381 - 29651503
Alignment:
| Q |
97 |
ttggtttcattcttctcaatcctgcaatagaagcaaacgaacaaaaaacctatttagcagaacaaaaaggaaaatggaaacagaacttgaaggcggcgac |
196 |
Q |
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| T |
29651381 |
ttggtttcattcttctcaatcctgcaatagaagcaaacgaacaaaaaacctatttagcagaacaaaaaggaaaatggaaacagaacttgaaggcggcgac |
29651480 |
T |
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| Q |
197 |
atgatgttgaacatgggttctgt |
219 |
Q |
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| T |
29651481 |
atgatgttgaacatgggttctgt |
29651503 |
T |
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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 29650322 - 29650414
Alignment:
| Q |
16 |
atagcaacctttaaa---tacataactaaataacagtctataaacagaactaaacttacttaccatcaacttcatggccactcattggtttca |
105 |
Q |
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| T |
29650322 |
atagcaacctttaaaaaatacataactcaataacagtctataaacagaactaaacttacttaccatcaacttcatggccactcattggtttca |
29650414 |
T |
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