View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_low_34 (Length: 237)
Name: NF1789_low_34
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_low_34 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 38877752 - 38877516
Alignment:
| Q |
1 |
atactatattatctatatttacttattttcaaaactacgggtcttacaattcgcaactctccaattagacaacagctgcctagctcgctccaatatagct |
100 |
Q |
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| T |
38877752 |
atactatattatctatatttaattattttcaaaactacgggtcttacaattcgcaactctccaattagacaacagctgcctagctcgctccaatatagct |
38877653 |
T |
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| Q |
101 |
tgggttgtctccgtaacattctgcaataaccttatattgtgactcttccacaaactccacacaattgttgcaaacaactcagcttgaccatgtgacagtt |
200 |
Q |
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| T |
38877652 |
tgggttgtctccgtaacattctgcaataaccttatattgtgactcttccacatactccacacaactgttgcaaacaactcagcttgaccatgtgacagtt |
38877553 |
T |
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| Q |
201 |
cctgcagcagcgcaaaagtgatttcagccgctgtgtt |
237 |
Q |
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| T |
38877552 |
cctgcagcagcgcaaaagtgatttcagccgctgtgtt |
38877516 |
T |
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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 5777771 - 5777680
Alignment:
| Q |
146 |
ttccacaaactccacacaattgttgcaaacaactcagcttgaccatgtgacagttcctgcagcagcgcaaaagtgatttcagccgctgtgtt |
237 |
Q |
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| T |
5777771 |
ttccacaaactccacacaaccattgcaaacaactcaccttgaacatgtgacagttcttgcagcaacgcaaaagtgatttcagccgctgtgtt |
5777680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 15662425 - 15662458
Alignment:
| Q |
141 |
gactcttccacaaactccacacaattgttgcaaa |
174 |
Q |
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| T |
15662425 |
gacttttccacaaactccacacaattgttgcaaa |
15662458 |
T |
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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 237
Target Start/End: Original strand, 30092485 - 30092665
Alignment:
| Q |
57 |
ctctccaattagacaacagctgcctagctcgctccaatatagcttgggttgtctccgtaacattctgcaataaccttatattgtgactcttccacaaact |
156 |
Q |
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| T |
30092485 |
ctctccatttaaataacagctgcctcgcgtgctccaatatggcctgggctgtttccgtaacattctgccataaccgtaaattgcggtttgtccacaaact |
30092584 |
T |
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| Q |
157 |
ccacacaattgttgcaaacaactcagcttgaccatgtgacagttcctgcagcagcgcaaaagtgatttcagccgctgtgtt |
237 |
Q |
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| T |
30092585 |
ccaaagtaccgttgcaaacaactgagcttgagcatgtgacagatcttgtaacaatgcaaaaatgatttcagccactgtgtt |
30092665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 237
Target Start/End: Complemental strand, 25938481 - 25938358
Alignment:
| Q |
113 |
gtaacattctgcaataaccttatattgtgactcttccacaaactccacacaattgttgcaaacaactcagcttgaccatgtgacagttcctgcagcagcg |
212 |
Q |
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| T |
25938481 |
gtaacattctgccacaacctcaaattacggctcttccacaaactccaaagaaccgtt-caaacaactcagtttgaacgaatgacagttcttgcagcaacg |
25938383 |
T |
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| Q |
213 |
caaaagtgatttcagccgctgtgtt |
237 |
Q |
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| T |
25938382 |
caaagatgatttcagccgttgtgtt |
25938358 |
T |
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