View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_low_42 (Length: 215)
Name: NF1789_low_42
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_low_42 |
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| [»] scaffold0309 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 11313249 - 11313064
Alignment:
| Q |
8 |
gaggagtagcaaaggcaggtgtaatagggacagtaataccaggtataggcataacagggatatggacagaaattggattaggcacaaaagggccaggctt |
107 |
Q |
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| T |
11313249 |
gaggcgtaacaaaggcaggtgtaatagggacagtaataccaggtataggcataacagggatatggacggaaattggattaggcacaaaagggccaggctt |
11313150 |
T |
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| Q |
108 |
aacaggagtaggcttcacaggagcaggtttaatagagacaggaggcttgacaggtgcaggtgtgactggagcaggaggcttaacag |
193 |
Q |
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| T |
11313149 |
aacaggagtaggcttaacaggagcaggtttaatagagacaggaggcttgacaggtgcaggcgtgactggagcaggaggcttaacag |
11313064 |
T |
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Target: scaffold0309 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0309
Description:
Target: scaffold0309; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 4291 - 4185
Alignment:
| Q |
25 |
ggtgtaatagggacagtaataccaggtataggcataaca---gggatatggacagaaattggattaggcacaaaagggccaggcttaacaggagtaggct |
121 |
Q |
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| T |
4291 |
ggtgtaatagggacaggattaacagggacaggcataacaacagggacatcaatagaaattggattaggcataaaagggctaggcttaacaggagcaggct |
4192 |
T |
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| Q |
122 |
tcacagg |
128 |
Q |
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| T |
4191 |
taacagg |
4185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 21471922 - 21471869
Alignment:
| Q |
75 |
agaaattggattaggcacaaaagggccaggcttaacaggagtaggcttcacagg |
128 |
Q |
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| T |
21471922 |
agaaattggattaggcgtaaaagggctaggcttaacaggagcaggcttaacagg |
21471869 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 2664951 - 2664848
Alignment:
| Q |
8 |
gaggagtagcaaaggcaggtgtaatagggacagtaataccaggtataggcataaca---gggatatggacagaaattggattaggcacaaaagggccagg |
104 |
Q |
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|||||||| ||| | |||| ||||||||||||| | || |||| || ||||||||| |||| || ||| ||||||||||||||| |||| ||||||| |
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| T |
2664951 |
gaggagtaacaacgacaggcgtaatagggacaggagtaacaggaatgggcataacaatagggacatcgacggaaattggattaggcctaaaaaggccagg |
2664852 |
T |
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| Q |
105 |
ctta |
108 |
Q |
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|||| |
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| T |
2664851 |
ctta |
2664848 |
T |
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