View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_low_5 (Length: 429)
Name: NF1789_low_5
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 10057758 - 10058160
Alignment:
| Q |
18 |
agcaccagcggcaatatcaccgcaacctgaagccacagtaattgcaggtttagatgaatccacaattgaatcttatgagaaagtgattattggggagagt |
117 |
Q |
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| T |
10057758 |
agcaccagcggcaatatcaccgcaacctgaagccacggtaattgcaggtttagatgaatccacaattgaatcttatgagaaagtaattattggggagagt |
10057857 |
T |
|
| Q |
118 |
cgacgtgttcctggaccgaacgacggatgttgttggatatgcttggcagaatacaacagtaaagagacagtaagatgcattcctgaatgcaaacattgtt |
217 |
Q |
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| T |
10057858 |
cgacgtgttcctggaccgaacgatggatgttgttggatatgcttggcagaatacaacagtaaagagacagtaagatgcattcctgaatgcaaacattgtt |
10057957 |
T |
|
| Q |
218 |
tccatgctgattgtattgatgagtggcttcgtatgaatgttacatgccctgtttgtcgtaactctcctgctccttctcctcttaatgttgcctccagtaa |
317 |
Q |
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| T |
10057958 |
tccatgctgattgtattgatgagtggcttcgtatgaatgttacatgccctgtttgtcgtaactctcctgctccttctcctcttaatgttgcctccagtaa |
10058057 |
T |
|
| Q |
318 |
tgtttgaatgattatggactaagcaaatcatac--nnnnnnnnagttaatattgtttgtgggtagttctgctgcgtgtatgtatatatttacaaatcatt |
415 |
Q |
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| T |
10058058 |
tgtttgaatgattatggactaagcaaatcatacttttttttttagttaatattgtttgtgggtagttctgctgcgtgtacgtatatatttacaaatcatt |
10058157 |
T |
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| Q |
416 |
cat |
418 |
Q |
| |
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||| |
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| T |
10058158 |
cat |
10058160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 266
Target Start/End: Original strand, 42013166 - 42013255
Alignment:
| Q |
177 |
taaagagacagtaagatgcattcctgaatgcaaacattgtttccatgctgattgtattgatgagtggcttcgtatgaatgttacatgccc |
266 |
Q |
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| T |
42013166 |
taaagagacgttgagaagcatccctgagtgcaaccattattttcatgctgcttgtattgatgagtggctcaaaatgaatggtacatgccc |
42013255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 284
Target Start/End: Complemental strand, 48474553 - 48474433
Alignment:
| Q |
164 |
cagaatacaacagtaaagagacagtaagatgcattcctgaatgcaaacattgtttccatgctgattgtattgatgagtggcttcgtatgaatgttacatg |
263 |
Q |
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|||| ||||||||||| || | | | ||||||||||||||||||||||| ||||| |||||| | || |||||||| |||||||| ||||| | |||||| |
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| T |
48474553 |
cagagtacaacagtaaggacataattagatgcattcctgaatgcaaacactgttttcatgctcactgcattgatgaatggcttcgcatgaacgctacatg |
48474454 |
T |
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| Q |
264 |
ccctgtttgtcgtaactctcc |
284 |
Q |
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||| ||||| || |||||||| |
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| T |
48474453 |
cccagtttgccgcaactctcc |
48474433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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