View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_low_7 (Length: 381)
Name: NF1789_low_7
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 364
Target Start/End: Complemental strand, 26523854 - 26523505
Alignment:
| Q |
15 |
gaggaaggaatgaggagagttcgtgattcaaatctagataggttaaaatatcgaggcaaaatagagtgaacttgtggtaaacgaaaatattattaaatta |
114 |
Q |
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| T |
26523854 |
gaggaaggaatgaggagagttcgtgattcaaatctagataggttaaaatatcgaggcaaaatagagtgaacttgtggtaaacaaaaatattattaaatta |
26523755 |
T |
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| Q |
115 |
gggcttggaaggtgtaaaaatatattgccagttgtannnnnnnnnnnnnaaaattttgggtggaaacaaagtgtaggtgtgttgtgtct----tttgatt |
210 |
Q |
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| T |
26523754 |
gggcttggaaggtgtaaaaatatattgccagttgtattttttattttttaaaattttgggtggaaacaaagtgtaggtgtgttgtgtctttggtttgatt |
26523655 |
T |
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| Q |
211 |
tgagattatcatagtgagtaggaggaggaggannnnnnngtcgtttaatgaggaagacttccacgtacaacagcacaaccctactactacctacgtgaaa |
310 |
Q |
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| T |
26523654 |
tgagattatcatagtgagtagtaggaggagga-ttttttgtcgtttattgaagaagacttccacgtacaacagcacaacc---ctactacctacgtgaaa |
26523559 |
T |
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| Q |
311 |
aatgatggatcaataatatggaacattaattctattttaattcatggtttagtt |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26523558 |
aatgatggatcaataatatggaacattaattctattttaattcatggtttagtt |
26523505 |
T |
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