View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17900_low_1 (Length: 429)
Name: NF17900_low_1
Description: NF17900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17900_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 10 - 414
Target Start/End: Original strand, 4410408 - 4410812
Alignment:
| Q |
10 |
aagaaaatttagaagcaatagttccatacatattcaataattggcatgatacttcaaactcaaaccctttgtgtgcaacttttggtgataataatagcta |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4410408 |
aagaaaatttagaagcaatagttccatacatattcaataattggcatgatacttcaaactcaaaccctttgtgtgcaacttttggtgataataatagcta |
4410507 |
T |
|
| Q |
110 |
tgttaacaagtttttgaaagctcaagagagtaatgttggaaccgaattcatgtcatattcgccgatagggaacatcgatccaaatggatggcaatcatca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4410508 |
tgttaacaagtttttgaaagctcaagagagtaatgttggaaccgaattcatgtcatattcgccgatagggaacattgatccaaatggatggcaatcatca |
4410607 |
T |
|
| Q |
210 |
aatgttgctaacttaacgaatctcgcttatagttcctcgaattgtagcaatgagctttcactaagtcttgcaacatctccaacttcaggtcaatgctcag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4410608 |
aatgttgctaacttaacgaatctcgcttatagttcctcgaattgtagcaatgagctttcactaagtcttgcaacatctccaacttcagttcaatgctcag |
4410707 |
T |
|
| Q |
310 |
agattagttgttcagacttaactcatagcatgaatggaacaagatcaggtttggaacaagcctcatgtagtagtatggaactttctatgagtttagggaa |
409 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4410708 |
agattagttgttctgacttaactcatagcatgaatggaacaagatcaggtttggaacaagcctcatgtagtagtatggaactttctatgagtttagggaa |
4410807 |
T |
|
| Q |
410 |
tgata |
414 |
Q |
| |
|
||||| |
|
|
| T |
4410808 |
tgata |
4410812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University