View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17900_low_2 (Length: 352)
Name: NF17900_low_2
Description: NF17900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17900_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 84 - 347
Target Start/End: Complemental strand, 14260024 - 14259761
Alignment:
| Q |
84 |
ggtagaagcaccgtgattctgaacggtaggtatccctgaatttaattaaatacattagatatgagtcttaacctttgttagtaaaattgtgaaatctgtt |
183 |
Q |
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| T |
14260024 |
ggtataagcaccgtgattctgaacggtaggtatccctgaatttaattaaatacattagatatgagtcttaacctttgttagtaaaattgtgaaatctgtt |
14259925 |
T |
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| Q |
184 |
aattacttacctttccataacttgatctttccaagaaaaactaccacacatgcattgtcagaagatccagatagtataaaatcgttcaagtcatccacaa |
283 |
Q |
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| T |
14259924 |
aattacttacctttccataacttgatctttccaagaaaaactaccacacatgcattgtcagaagatccagatagtataaaatcgttcaagtcatccacaa |
14259825 |
T |
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| Q |
284 |
aatgatcatagagaatacatttgaatcgataactaaaatatatcaaaaacattttcatatcact |
347 |
Q |
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| T |
14259824 |
aatgatcatggagaatacatttgaatcgataactaaaatataccaaaaacattttcatatcact |
14259761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 190 - 339
Target Start/End: Complemental strand, 14265444 - 14265298
Alignment:
| Q |
190 |
ttacctttccataacttgatctttccaagaaaaactaccacacatgcattgtcagaagatccagatagtataaaatcgttcaagtcatccacaaaatgat |
289 |
Q |
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| T |
14265444 |
ttacatttccataactcgatctttccaagaaaaaccaccacacgtgaattgtcaaaagatcca--tagtataaaatcggtcaagtcatctacaaaatggt |
14265347 |
T |
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| Q |
290 |
catagagaatacatttgaatcgataactaaaatatatcaaaaacattttc |
339 |
Q |
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| T |
14265346 |
catgaagaatacacttgaatcgataact-aaatataccataaacattttc |
14265298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 14260181 - 14260093
Alignment:
| Q |
1 |
tcatcctgaatataaaaaataaattgaatagatttttnnnnnnnntaatatctttttatacattgtttataataaaaataaacggtaga |
89 |
Q |
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| T |
14260181 |
tcatcctgaatataaaaaataaattgaatagatttttataaaaaataatatctttttatacattgtttataataaaaataaacggtaga |
14260093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 190 - 320
Target Start/End: Original strand, 22146052 - 22146182
Alignment:
| Q |
190 |
ttacctttccataacttgatctttccaagaaaaactaccacacatgcattgtcagaagatccagatagtataaaatcgttcaagtcatccacaaaatgat |
289 |
Q |
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||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| | |
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| T |
22146052 |
ttaccttaccataatttgatctttccaaggaaaactaccacacatgcattgtcagaagatcctgatagtataaaatcggtgaagtcatccacaaaacggc |
22146151 |
T |
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| Q |
290 |
catagagaatacatttgaatcgataactaaa |
320 |
Q |
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| T |
22146152 |
catggagaatacacttgaatcggtatctaaa |
22146182 |
T |
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