View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17900_low_4 (Length: 242)

Name: NF17900_low_4
Description: NF17900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17900_low_4
NF17900_low_4
[»] chr7 (27 HSPs)
chr7 (15-184)||(5792664-5792833)
chr7 (19-229)||(30756877-30757089)
chr7 (19-229)||(9450195-9450407)
chr7 (19-201)||(34899665-34899849)
chr7 (22-229)||(42978429-42978640)
chr7 (17-129)||(12141364-12141476)
chr7 (19-212)||(19296716-19296903)
chr7 (19-94)||(39328848-39328923)
chr7 (19-228)||(48316870-48317081)
chr7 (25-129)||(47590233-47590338)
chr7 (41-199)||(40993032-40993193)
chr7 (19-227)||(37837516-37837726)
chr7 (19-129)||(48061345-48061455)
chr7 (19-93)||(8001604-8001678)
chr7 (153-229)||(1749334-1749411)
chr7 (25-125)||(3267276-3267377)
chr7 (19-88)||(38798745-38798814)
chr7 (30-229)||(19404826-19405024)
chr7 (17-129)||(39171646-39171760)
chr7 (19-93)||(24770205-24770279)
chr7 (20-125)||(4530005-4530108)
chr7 (19-229)||(13796987-13797201)
chr7 (148-229)||(35132772-35132855)
chr7 (29-125)||(25287254-25287351)
chr7 (169-201)||(26610952-26610984)
chr7 (42-94)||(27997046-27997098)
chr7 (36-125)||(28476146-28476236)
[»] chr1 (31 HSPs)
chr1 (19-229)||(27456362-27456574)
chr1 (19-229)||(7337721-7337933)
chr1 (19-227)||(5983660-5983870)
chr1 (19-129)||(31918912-31919022)
chr1 (19-129)||(1742203-1742315)
chr1 (27-129)||(23291708-23291812)
chr1 (19-129)||(940287-940397)
chr1 (19-94)||(21686832-21686907)
chr1 (19-229)||(34878336-34878541)
chr1 (19-129)||(11462506-11462616)
chr1 (19-212)||(45415398-45415592)
chr1 (31-129)||(8211980-8212079)
chr1 (19-93)||(7836854-7836928)
chr1 (19-129)||(13144870-13144981)
chr1 (19-129)||(35484449-35484560)
chr1 (55-129)||(27580222-27580296)
chr1 (55-201)||(31984030-31984176)
chr1 (19-93)||(51916719-51916793)
chr1 (22-129)||(32394921-32395029)
chr1 (42-129)||(35462118-35462206)
chr1 (148-226)||(49626735-49626815)
chr1 (19-129)||(14872563-14872674)
chr1 (28-129)||(39888115-39888217)
chr1 (153-229)||(21686695-21686772)
chr1 (19-129)||(21947676-21947787)
chr1 (155-217)||(27580322-27580385)
chr1 (19-94)||(50377287-50377362)
chr1 (25-129)||(15836115-15836220)
chr1 (184-229)||(32679324-32679369)
chr1 (25-129)||(34479414-34479519)
chr1 (155-229)||(10776654-10776730)
[»] chr4 (37 HSPs)
chr4 (19-229)||(22611023-22611234)
chr4 (19-201)||(54021728-54021911)
chr4 (25-201)||(10258960-10259136)
chr4 (25-229)||(21686306-21686510)
chr4 (19-227)||(32766355-32766565)
chr4 (19-229)||(53810867-53811079)
chr4 (19-229)||(2520616-2520830)
chr4 (17-229)||(19853568-19853781)
chr4 (19-129)||(17949382-17949493)
chr4 (19-129)||(17953234-17953345)
chr4 (19-229)||(4142810-4143024)
chr4 (18-129)||(29120420-29120532)
chr4 (19-129)||(13634055-13634166)
chr4 (19-201)||(43510066-43510248)
chr4 (28-198)||(35348176-35348349)
chr4 (17-129)||(43095570-43095681)
chr4 (19-127)||(11300049-11300159)
chr4 (19-125)||(33920995-33921102)
chr4 (19-129)||(56040704-56040813)
chr4 (19-129)||(26633729-26633840)
chr4 (19-94)||(53444094-53444169)
chr4 (30-129)||(5119279-5119379)
chr4 (26-94)||(8670461-8670529)
chr4 (29-125)||(37030207-37030302)
chr4 (19-94)||(9178329-9178404)
chr4 (169-227)||(22300686-22300745)
chr4 (27-129)||(40066121-40066224)
chr4 (19-94)||(56156700-56156775)
chr4 (56-201)||(45418393-45418540)
chr4 (169-229)||(36204590-36204650)
chr4 (153-201)||(10496209-10496258)
chr4 (153-229)||(22038991-22039068)
chr4 (184-229)||(51888441-51888486)
chr4 (158-203)||(52978689-52978734)
chr4 (147-229)||(22558651-22558735)
chr4 (145-201)||(24099254-24099313)
chr4 (171-226)||(47320612-47320668)
[»] chr3 (49 HSPs)
chr3 (19-229)||(9998285-9998497)
chr3 (19-229)||(10229293-10229506)
chr3 (19-229)||(10232889-10233100)
chr3 (19-229)||(10108057-10108266)
chr3 (25-229)||(35864996-35865203)
chr3 (35-229)||(21431444-21431639)
chr3 (17-198)||(6954752-6954935)
chr3 (19-201)||(23799968-23800151)
chr3 (17-229)||(45568501-45568714)
chr3 (19-201)||(36461489-36461673)
chr3 (26-99)||(46220630-46220703)
chr3 (19-116)||(53099723-53099820)
chr3 (26-229)||(40556530-40556735)
chr3 (19-199)||(52923175-52923355)
chr3 (20-129)||(9319976-9320086)
chr3 (20-197)||(43488649-43488827)
chr3 (147-229)||(4821626-4821710)
chr3 (22-94)||(47042110-47042182)
chr3 (19-229)||(48650792-48651005)
chr3 (19-129)||(12149842-12149953)
chr3 (19-125)||(20987857-20987964)
chr3 (19-94)||(38545754-38545829)
chr3 (19-93)||(20608957-20609031)
chr3 (19-129)||(38860178-38860288)
chr3 (29-129)||(12050716-12050816)
chr3 (19-129)||(40487244-40487356)
chr3 (155-229)||(29239158-29239232)
chr3 (19-129)||(47896071-47896182)
chr3 (19-212)||(54148824-54149022)
chr3 (20-129)||(36910700-36910810)
chr3 (19-129)||(44960010-44960121)
chr3 (29-129)||(18010938-18011040)
chr3 (19-128)||(31271865-31271975)
chr3 (20-115)||(32701426-32701520)
chr3 (170-226)||(50194493-50194550)
chr3 (155-229)||(20609091-20609167)
chr3 (171-229)||(29921871-29921931)
chr3 (171-229)||(29971024-29971084)
chr3 (19-128)||(19339095-19339206)
chr3 (19-125)||(20465028-20465135)
chr3 (19-129)||(21533867-21533978)
chr3 (147-229)||(51303825-51303908)
chr3 (30-124)||(43016780-43016874)
chr3 (147-208)||(46220519-46220581)
chr3 (145-227)||(7449086-7449170)
chr3 (145-227)||(7457228-7457312)
chr3 (169-229)||(20465177-20465237)
chr3 (172-227)||(42460567-42460623)
chr3 (169-201)||(53508069-53508101)
[»] chr6 (21 HSPs)
chr6 (19-229)||(33053226-33053438)
chr6 (19-229)||(606024-606236)
chr6 (19-129)||(3913632-3913743)
chr6 (19-229)||(23128438-23128650)
chr6 (23-129)||(127591-127698)
chr6 (19-129)||(7515260-7515370)
chr6 (19-229)||(68059-68270)
chr6 (19-129)||(32327275-32327386)
chr6 (29-129)||(34018481-34018582)
chr6 (63-229)||(12170315-12170483)
chr6 (23-204)||(30608576-30608757)
chr6 (19-94)||(29319936-29320011)
chr6 (178-227)||(28981001-28981050)
chr6 (148-229)||(545845-545927)
chr6 (20-86)||(3355082-3355148)
chr6 (171-229)||(7976376-7976434)
chr6 (145-229)||(29320046-29320132)
chr6 (25-69)||(20220860-20220904)
chr6 (25-69)||(22114844-22114888)
chr6 (36-121)||(30776594-30776680)
chr6 (26-66)||(32059894-32059934)
[»] chr5 (25 HSPs)
chr5 (19-229)||(26825247-26825460)
chr5 (19-229)||(9113783-9113995)
chr5 (19-229)||(13007047-13007259)
chr5 (19-199)||(11867529-11867698)
chr5 (19-229)||(38597616-38597827)
chr5 (17-129)||(14726517-14726631)
chr5 (19-229)||(6012196-6012408)
chr5 (30-129)||(6216818-6216918)
chr5 (19-125)||(24229842-24229950)
chr5 (22-94)||(35850754-35850826)
chr5 (19-129)||(11976993-11977106)
chr5 (79-229)||(34945240-34945391)
chr5 (19-129)||(25980077-25980188)
chr5 (18-229)||(7036046-7036250)
chr5 (29-129)||(15571405-15571506)
chr5 (19-201)||(8096555-8096738)
chr5 (17-201)||(41630352-41630534)
chr5 (19-129)||(11073958-11074069)
chr5 (19-129)||(38007275-38007388)
chr5 (28-129)||(14082440-14082539)
chr5 (145-229)||(26878263-26878348)
chr5 (148-229)||(2979499-2979582)
chr5 (27-69)||(7930157-7930199)
chr5 (153-201)||(14664219-14664267)
chr5 (145-212)||(35850620-35850688)
[»] chr2 (38 HSPs)
chr2 (21-229)||(9169319-9169527)
chr2 (19-229)||(8809111-8809321)
chr2 (19-229)||(7646301-7646514)
chr2 (19-229)||(4098932-4099144)
chr2 (31-129)||(31128851-31128949)
chr2 (19-129)||(29279629-29279740)
chr2 (19-229)||(36943180-36943394)
chr2 (19-128)||(7448178-7448288)
chr2 (22-201)||(38445024-38445204)
chr2 (22-229)||(4778582-4778791)
chr2 (19-212)||(43397178-43397372)
chr2 (19-229)||(27097465-27097675)
chr2 (30-129)||(4904215-4904315)
chr2 (19-94)||(1415523-1415598)
chr2 (19-129)||(11985289-11985400)
chr2 (19-125)||(5427927-5428033)
chr2 (25-129)||(7677938-7678041)
chr2 (25-129)||(31210672-31210777)
chr2 (17-129)||(35220256-35220368)
chr2 (30-129)||(4041664-4041764)
chr2 (28-201)||(17994789-17994958)
chr2 (15-129)||(19062407-19062522)
chr2 (169-229)||(37994104-37994164)
chr2 (19-110)||(19028973-19029064)
chr2 (30-128)||(25509138-25509233)
chr2 (64-228)||(11833314-11833477)
chr2 (25-94)||(18763434-18763503)
chr2 (19-129)||(1421605-1421717)
chr2 (22-94)||(33923671-33923743)
chr2 (27-124)||(36691808-36691907)
chr2 (26-129)||(39310918-39311022)
chr2 (55-129)||(29173814-29173889)
chr2 (169-227)||(29574842-29574901)
chr2 (169-223)||(32448830-32448885)
chr2 (170-229)||(36175652-36175711)
chr2 (145-229)||(12648109-12648194)
chr2 (19-93)||(37876665-37876739)
chr2 (171-227)||(30400250-30400307)
[»] chr8 (29 HSPs)
chr8 (19-229)||(27110521-27110732)
chr8 (19-201)||(7883297-7883480)
chr8 (19-220)||(28897541-28897742)
chr8 (19-201)||(14544959-14545143)
chr8 (28-197)||(40619138-40619307)
chr8 (19-126)||(7677339-7677445)
chr8 (19-129)||(23230566-23230676)
chr8 (19-129)||(45445867-45445979)
chr8 (19-94)||(10377647-10377722)
chr8 (169-224)||(14916344-14916399)
chr8 (19-94)||(25191123-25191198)
chr8 (19-125)||(27498420-27498527)
chr8 (19-94)||(28086869-28086944)
chr8 (22-93)||(37971242-37971313)
chr8 (169-226)||(8981021-8981079)
chr8 (145-229)||(31013753-31013839)
chr8 (157-229)||(3673267-3673340)
chr8 (148-226)||(15344130-15344210)
chr8 (148-226)||(15433195-15433275)
chr8 (148-226)||(15524499-15524579)
chr8 (19-91)||(16247279-16247351)
chr8 (154-229)||(17693805-17693881)
chr8 (169-229)||(24099469-24099528)
chr8 (19-125)||(24186716-24186822)
chr8 (145-201)||(37971141-37971199)
chr8 (145-201)||(29937964-29938021)
chr8 (19-129)||(36948493-36948605)
chr8 (25-129)||(44091810-44091915)
chr8 (36-125)||(18890779-18890869)
[»] scaffold0136 (2 HSPs)
scaffold0136 (19-129)||(10100-10210)
scaffold0136 (55-129)||(37966-38040)
[»] scaffold0017 (1 HSPs)
scaffold0017 (19-129)||(32805-32917)
[»] scaffold0127 (1 HSPs)
scaffold0127 (19-229)||(15311-15523)
[»] scaffold0445 (1 HSPs)
scaffold0445 (20-229)||(1163-1374)
[»] scaffold0262 (1 HSPs)
scaffold0262 (19-198)||(1877-2056)
[»] scaffold0121 (1 HSPs)
scaffold0121 (17-126)||(31330-31436)
[»] scaffold0128 (1 HSPs)
scaffold0128 (22-129)||(36750-36858)
[»] scaffold0026 (1 HSPs)
scaffold0026 (19-229)||(71922-72134)
[»] scaffold0634 (1 HSPs)
scaffold0634 (19-129)||(8432-8543)
[»] scaffold0088 (1 HSPs)
scaffold0088 (55-229)||(50605-50781)
[»] scaffold0603 (2 HSPs)
scaffold0603 (25-129)||(7635-7741)
scaffold0603 (171-229)||(7536-7595)
[»] scaffold0049 (1 HSPs)
scaffold0049 (169-210)||(71492-71533)
[»] scaffold0009 (1 HSPs)
scaffold0009 (169-223)||(58288-58343)
[»] scaffold0884 (1 HSPs)
scaffold0884 (27-124)||(2039-2136)
[»] scaffold0618 (1 HSPs)
scaffold0618 (25-129)||(7995-8100)
[»] scaffold0064 (1 HSPs)
scaffold0064 (169-229)||(19246-19306)


Alignment Details
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 5792833 - 5792664
Alignment:
Q  15 ctgtgacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgat 114  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| | | ||||||| ||| ||||||||||||||||| || |||||||| ||    
T  5792833 ctgtgacaagacgcgaaatcaaacgtcgcacaagatgactaacaacacaacactgcaattagacgacaaaataacaaaaacacaacaaaaaaaactcaat 5792734  T
Q  115 atatgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtca 184  Q
    ||||||||||||||        |||| || ||||||||| |||||||||||||  ||||||||||||||||    
T  5792733 atatgtgaaaacca-tttttttagaatgaaagaaaagagaaaaaaagatgtagaggggtgattttaggtca 5792664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 30756877 - 30757089
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||||||| | ||||| |||||||| || |||||||||| | |||||||  |||| |    
T  30756877 gacaaaacgcgaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacatgataga 30756976  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacga 215  Q
    |||||||| |||       |||  || ||||||| |||||||||||||||  |||||||| |||||| |||||| ||||||||||| |||| ||||| ||    
T  30756977 tgtgaaaatcac-ttatttagattgaaagaaaaggggaaaaaagatgtagaggggtgattctaggtcaaaaaattacctaaaaccacccctcctcgatga 30757075  T
Q  216 atgaaagagaaaga 229  Q
    | ||||||||||||    
T  30757076 acgaaagagaaaga 30757089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 9450195 - 9450407
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||||| ||||||||||||| ||||||||| ||| ||||||||||||||  | ||||| |||||||| || |||||||||| | || ||||| |||| |    
T  9450195 gacaaaatgcgaaatcaaacgccgcacaagacgacgaacaacacaacgccacacttagacgacgaaatcacaaaaaacacaaaaggagaaactagataga 9450294  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacga 215  Q
    |||||||| |||       |||  || ||||||| ||||| |||||||||  |||||||| |||||| ||||||||||||||||||||||| ||||| ||    
T  9450295 tgtgaaaatcac-ttatttagattgaaagaaaaggggaaacaagatgtagatgggtgattctaggtcaaaaaatgacctaaaaccatccctcctcgatga 9450393  T
Q  216 atgaaagagaaaga 229  Q
    | ||| ||||||||    
T  9450394 acgaaggagaaaga 9450407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 34899665 - 34899849
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||||| ||||||||||||| ||||||||| ||| ||||||||||||||| | ||||| |||||||| || |||||||||| | |||||||| |||| |    
T  34899665 gacaaaaagcgaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgataga 34899764  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaacca 201  Q
    ||||||||||||       |||  || ||||||| | |||||||||||||  |||||||| |||||| ||||||||||||||||||    
T  34899765 tgtgaaaaccac-ttatttagattgaaagaaaagggaaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaacca 34899849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 42978640 - 42978429
Alignment:
Q  22 aaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaa--aacacaataagaaaaactcgatatatg 119  Q
    |||||| ||||||||||| ||||||||| ||| ||||||||||||||| | ||||| |||||||| |||||  ||||||| | ||||||||  |||||||    
T  42978640 aaaacgagaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaagaacacaaaaggaaaaactttatatatg 42978541  T
Q  120 tgaaaaccacnnnnnnnagaacgagagaaaagagga-aaaaagatgtagcg-ggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacgaa 216  Q
    ||||||||||       |||  ||  |||||| ||| |||||||||||| | ||||||| |||||| |||||||||||||||||| |||| ||||| |||    
T  42978540 tgaaaaccac-ttatttagattgatcgaaaaggggagaaaaagatgtagagtggtgattctaggtcaaaaaatgacctaaaaccacccctcctcgatgaa 42978442  T
Q  217 tgaaagagaaaga 229  Q
     ||| ||||||||    
T  42978441 cgaaggagaaaga 42978429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 12141364 - 12141476
Alignment:
Q  17 gtgacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatat 116  Q
    ||||||| ||||||||||||| | ||||||||| ||| ||||||| ||||||| | ||||| |||||||| |||||||||||| |  ||||||| ||||     
T  12141364 gtgacaagacgcgaaatcaaatgccgcacaagacgacaaacaacaaaacgccgcacttagacgacgaaatcacaaaaacacaaaagaaaaaacttgatag 12141463  T
Q  117 atgtgaaaaccac 129  Q
    |||||||||||||    
T  12141464 atgtgaaaaccac 12141476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 19296903 - 19296716
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||||| ||||||||||||| ||||||||| ||| ||||||||||||||| | ||||| |||||||| || |||||||||| | |||||||| |||| |    
T  19296903 gacaaaatgcgaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgataga 19296804  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcga 212  Q
    |||||||            |||  || ||||||| |||||||||||||||  |||||||| |||||| |||||||||||||||||| |||| |||||    
T  19296803 tgtgaaa---------tttagattgaaagaaaaggggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctcctcga 19296716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 39328848 - 39328923
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa 94  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| ||||| |||||||| |||||||    
T  39328848 gacaaaacgcgaaatcaaacgccgcacaagacgacgaacaacacaacgccgtacttagacgacgaaatcacaaaaa 39328923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 48316870 - 48317081
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| |||||||||||||||  |||||||| ||| ||||||||||||||||| ||||| |||||||| || |||||||||| |  ||||| | |||| |    
T  48316870 gacaagacgcgaaatcaaacgctgcacaagacgacgaacaacacaacgccgtacttagacgacgaaatcacaaaaaacacaaaagaaaaaatttgataga 48316969  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggt-caaaaatgacctaaaaccatcccttctcgacga 215  Q
    ||||||||||||       | |  || ||||||| || ||||||||||||  |||||||| ||||| ||||||||||||||||||| |||| || || ||    
T  48316970 tgtgaaaaccacttatttaa-attgaaagaaaagggggaaaaagatgtagaggggtgattctaggtccaaaaatgacctaaaaccacccctccttgatga 48317068  T
Q  216 atgaaagagaaag 228  Q
    | ||| |||||||    
T  48317069 acgaaggagaaag 48317081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 47590338 - 47590233
Alignment:
Q  25 acgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgtgaa 123  Q
    |||| |||||||||| ||||||||| ||| ||||||||||||||| | |||||  ||||||| || |||||||||| | |||||||| ||||||||||||    
T  47590338 acgcaaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagacaacgaaatcacaaaaaacacaaaaggaaaaacttgatatatgtgaa 47590239  T
Q  124 aaccac 129  Q
    ||||||    
T  47590238 aaccac 47590233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 40993193 - 40993032
Alignment:
Q  41 cgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgtgaaaaccacnnnnnnnaga 139  Q
    ||||||||||||| ||||||||||||||| | ||||| |||||||| || |||||||||| | |||||||| |||| |||||||||||||       |||    
T  40993193 cgcacaagatgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatagatgtgaaaaccac-ttatttaga 40993095  T
Q  140 acgagagaaaagagg-aaaaaagatgtagcgg-gtgattttaggtc-aaaaatgacctaaaac 199  Q
      || ||||||| || ||||||||||||| || ||||||||||||| ||||||||||||||||    
T  40993094 ttgaaagaaaagtggaaaaaaagatgtagaggagtgattttaggtcaaaaaatgacctaaaac 40993032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 37837516 - 37837726
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac--aaaaacacaataagaaaaactcgatat 116  Q
    ||||| |||| |||||||||| ||||||||| ||| ||||||||||||||| | |||||||| ||||| ||  |||||||||| |  |||||||  ||||    
T  37837516 gacaagacgcaaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagatgatgaaatcacaaaaaaacacaaaagaaaaaacttaatat 37837615  T
Q  117 atgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacg 214  Q
    ||||| |||||||       |||  || ||||||| |||||||||||||||  |||||||| |||||| |||||||||||||||||| |||| ||| | |    
T  37837616 atgtgtaaaccac-ttatttagattgaaagaaaag-ggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctcctcaatg 37837713  T
Q  215 aatgaaagagaaa 227  Q
    || ||| ||||||    
T  37837714 aacgaaggagaaa 37837726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 48061455 - 48061345
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| |||| ||||||||||||||| |||| ||| ||||||| || |||| | ||||| |||||||| |||||||||||| |  ||||||| |||| ||    
T  48061455 gacaagacgcaaaatcaaacgtcgcataagacgacgaacaacaaaatgccgcacttagacgacgaaatcacaaaaacacaaaagaaaaaacttgatagat 48061356  T
Q  119 gtgaaaaccac 129  Q
    |||||||||||    
T  48061355 gtgaaaaccac 48061345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 8001604 - 8001678
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaa 93  Q
    ||||| ||||||||||||||| ||||||||| ||| ||||||| ||||||| | ||||| |||||||| ||||||    
T  8001604 gacaagacgcgaaatcaaacgccgcacaagacgacgaacaacaaaacgccgcacttagacgacgaaatcacaaaa 8001678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 1749334 - 1749411
Alignment:
Q  153 ggaaaaaagatgtagcgggtgattttaggtcaaaaa-tgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    |||||||||||| ||||||||||| ||||||||||| |||||||||| || |||| ||||| || |||||||| ||||    
T  1749334 ggaaaaaagatgaagcgggtgattctaggtcaaaaattgacctaaaatcacccctcctcgatgagtgaaagaggaaga 1749411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 3267276 - 3267377
Alignment:
Q  25 acgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaat-aacaaaaacacaataagaaaaactcgatatatgtgaa 123  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||| | |||| ||||||| | || |||| ||||| |  ||||||| |||| |||||||    
T  3267276 acgcgaaatcaaacgtcgcacaagacgacgaacaacaaaacgccgcacttaggtgacgaagtcaaaaaaaccacaaaagaaaaaacttgatagatgtgaa 3267375  T
Q  124 aa 125  Q
    ||    
T  3267376 aa 3267377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 38798814 - 38798745
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataa 88  Q
    |||||||||| |||||||||| ||||||||| ||| |||||||||||| |||| ||||| ||| ||||||    
T  38798814 gacaaaacgcaaaatcaaacgccgcacaagacgacgaacaacacaacgtcgtacttagacgacaaaataa 38798745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 229
Target Start/End: Original strand, 19404826 - 19405024
Alignment:
Q  30 aaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatatgtgaaaaccac 129  Q
    ||||||||||  |||||||| ||| ||||| | ||||||| | ||||| |||||||| || ||||  ||| | |||||||| ||| ||||||||||||||    
T  19404826 aaatcaaacgatgcacaagacgacgaacaatagaacgccgcacttagacgacgaaatcactaaaat-caaaaggaaaaacttgatttatgtgaaaaccac 19404924  T
Q  130 nnnnnnnagaacgagagaaaagaggaaaaaagatgtagcggg-tgattttaggtcaaaa-atgacctaaaaccatcccttctcgacgaatgaaagagaaa 227  Q
           |||  || ||||||| | ||||||||||||| ||| ||||| |||||||||| |||||||||||||| |||||||| | |||| || ||||||    
T  19404925 ttattt-agattgaaagaaaag-gaaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccaccccttctcaatgaattaaggagaaa 19405022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 39171646 - 39171760
Alignment:
Q  17 gtgacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac--aaaaacacaataagaaaaactcgat 114  Q
    ||||||| |||  ||||||||||  |||||||| ||| ||||||| ||||| | | |||||||||||||| ||  |||||||||| | |||||||| |||    
T  39171646 gtgacaagacgtaaaatcaaacgctgcacaagacgacgaacaacaaaacgcagcacttagatgacgaaatcacaaaaaaacacaaaaggaaaaacttgat 39171745  T
Q  115 atatgtgaaaaccac 129  Q
    | || ||||||||||    
T  39171746 agatatgaaaaccac 39171760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 24770279 - 24770205
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaa 93  Q
    ||||| || ||||||||||||||||| |||| ||| ||||||||||| ||| | ||||| |||||||| ||||||    
T  24770279 gacaagacacgaaatcaaacgtcgcataagacgacgaacaacacaacaccgcacttagacgacgaaatcacaaaa 24770205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 4530108 - 4530005
Alignment:
Q  20 acaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatatg 119  Q
    |||| |||| |||||||||| | ||||| ||||| || |||||||| ||||| ||||| |||||||| ||||||| |||  |||||||| | ||||||||    
T  4530108 acaagacgcaaaatcaaacgccacacaa-atgacgaataacacaacaccgtacttagacgacgaaatcacaaaaa-acacaaagaaaaatttgatatatg 4530011  T
Q  120 tgaaaa 125  Q
    ||||||    
T  4530010 tgaaaa 4530005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 13796987 - 13797201
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagat---gactaacaacacaacgccgtaattagatgacgaaat-aacaaaaacacaataagaaaaactcgat 114  Q
    ||||| || |||||||||||||||||||||||    || ||||||||||||||| | ||||| |||||||| |  |||||||||| | |||||||| |||    
T  13796987 gacaagacacgaaatcaaacgtcgcacaagatcacaacgaacaacacaacgccgcacttagacgacgaaatcataaaaaacacaaaaggaaaaacttgat 13797086  T
Q  115 atatgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttagg-tcaaaaatgacctaaaaccatcccttctcga 212  Q
    | |||| |||| |||       | |  || ||||||| || ||||||||||||  |||||||| |||| | ||||||||||||||||||||| | |||||    
T  13797087 agatgttaaaatcacttatttaa-attgaaagaaaag-gggaaaaagatgtagaggggtgattctaggttaaaaaatgacctaaaaccatccatcctcga 13797184  T
Q  213 cgaatgaaagagaaaga 229  Q
     ||| ||| ||||||||    
T  13797185 tgaacgaacgagaaaga 13797201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 35132855 - 35132772
Alignment:
Q  148 aaagaggaaaaaagatgtagcggg-tgattttaggtcaaaaa-tgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    |||| ||||||||||||||| ||| ||||| ||||||||||| |||||||||| || |||| ||||| || |||||||| ||||    
T  35132855 aaaggggaaaaaagatgtagaggggtgattctaggtcaaaaattgacctaaaatcacccctcctcgatgagtgaaagaggaaga 35132772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 25287254 - 25287351
Alignment:
Q  29 gaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgtgaaaa 125  Q
    ||||||||| ||||||||||| ||| ||||||||||||||  | |||||  || |||| || ||||||| || ||||||||||  ||||| |||||||    
T  25287254 gaaatcaaatgtcgcacaagacgacgaacaacacaacgccacacttagacaacaaaatcacaaaaaacataaaaagaaaaacttaatatacgtgaaaa 25287351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 26610952 - 26610984
Alignment:
Q  169 gggtgattttaggtcaaaaatgacctaaaacca 201  Q
    ||||||||||||||||||||| |||||||||||    
T  26610952 gggtgattttaggtcaaaaataacctaaaacca 26610984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 27997098 - 27997046
Alignment:
Q  42 gcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa 94  Q
    |||||||||||| |||||||||| |||| | | ||| ||||||||||||||||    
T  27997098 gcacaagatgacgaacaacacaatgccgcactcagacgacgaaataacaaaaa 27997046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 28476236 - 28476146
Alignment:
Q  36 aacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac--aaaaacacaataagaaaaactcgatatatgtgaaaa 125  Q
    |||| ||||||||| ||| |||||||||||| || | | ||| |||||||| ||  |||||||||| |||||||||| ||| ||||||||||    
T  28476236 aacgccgcacaagacgacgaacaacacaacgtcgcactaagacgacgaaatcacgaaaaaacacaa-aagaaaaacttgatgtatgtgaaaa 28476146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 27456574 - 27456362
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||| || ||||| |||||||||||| | ||| ||||  ||||||    
T  27456574 gacaagacgcgaaatcaaacgttgcacaagatgactaacaacacaacgccgcaattagacgatgaaatcacaaaaacacaaaaggaagaacttaatatat 27456475  T
Q  119 gtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtagcgg-gtgattttaggt--caaaaatgacctaaaaccatcccttctcgacga 215  Q
    | |||||||||       |||  || ||||||||||||||||||||||| || ||||||||||||   ||||| ||  ||||||||||||| ||||||||    
T  27456474 gcgaaaaccac-ttatttagattgaaagaaaagaggaaaaaagatgtagaggagtgattttaggtaaaaaaaaagagttaaaaccatccctcctcgacga 27456376  T
Q  216 atgaaagagaaaga 229  Q
    ||||| ||||||||    
T  27456375 atgaaggagaaaga 27456362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 7337721 - 7337933
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| |||||||||||||||| |||||||| ||| ||||||||||||||| | ||||| || ||||| || |||||||||| | |||||||| |||| |    
T  7337721 gacaagacgcgaaatcaaacgttgcacaagacgacgaacaacacaacgccgcacttagacgatgaaatcacaaaaaacacaaaaggaaaaacttgataga 7337820  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacga 215  Q
    ||||||||||||       |||  || |||||||||||||||||||||||  |||||||| ||| || ||||||||| || |||||||||| ||||| ||    
T  7337821 tgtgaaaaccac-ttatttagattgaaagaaaagaggaaaaaagatgtagaggggtgattctagatcaaaaaatgacatagaaccatccctcctcgatga 7337919  T
Q  216 atgaaagagaaaga 229  Q
    | ||| ||||||||    
T  7337920 acgaaggagaaaga 7337933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 5983870 - 5983660
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| || |||||||||||| ||||||||| ||| ||||||| ||||||| | ||||| |||||||| |||||||||||| |  ||||||| |||| ||    
T  5983870 gacaagacacgaaatcaaacgccgcacaagacgacgaacaacaaaacgccgcacttagacgacgaaatcacaaaaacacaaaagcaaaaacttgatagat 5983771  T
Q  119 gtgaaaaccacnnnnnnnagaacgagag-aaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacga 215  Q
    ||||||||||        ||| ||| || ||||| ||||||||||||||| || |||||| |||||| |||||||| |||||||||||||| ||||| ||    
T  5983770 gtgaaaacca-tttatttagatcgaaagaaaaaggggaaaaaagatgtagacgagtgattctaggtcaaaaaatgatctaaaaccatccctcctcgatga 5983672  T
Q  216 atgaaagagaaa 227  Q
    | ||| ||||||    
T  5983671 acgaaggagaaa 5983660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 31919022 - 31918912
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| ||||||||||||||| ||||||| ||| ||||||||||| ||||| ||||||| |||||||| ||||||| |||| |  ||||||| |||||||    
T  31919022 gacaagacgcgaaatcaaacgccgcacaaaatggctaacaacacatcgccgcaattagacgacgaaatcacaaaaatacaaaagaaaaaacttgatatat 31918923  T
Q  119 gtgaaaaccac 129  Q
    |||||||||||    
T  31918922 gtgaaaaccac 31918912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 1742315 - 1742203
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac--aaaaacacaataagaaaaactcgatat 116  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||||||||||| | ||||| |||||||| ||  ||||| |||| |  ||||||| |||||    
T  1742315 gacaagacgcgaaatcaaacgtcgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaaatacaaaagaaaaaacttgatat 1742216  T
Q  117 atgtgaaaaccac 129  Q
    |||||||||||||    
T  1742215 atgtgaaaaccac 1742203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 23291708 - 23291812
Alignment:
Q  27 gcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac--aaaaacacaataagaaaaactcgatatatgtgaaa 124  Q
    |||||||||||||||||||||||| |  ||||||||||||||||| ||||| |||||||| ||  |||||||||| |  ||||||| |||||||||||||    
T  23291708 gcgaaatcaaacgtcgcacaagataatgaacaacacaacgccgtacttagacgacgaaatcacaaaaaaacacaaaagaaaaaacttgatatatgtgaaa 23291807  T
Q  125 accac 129  Q
    |||||    
T  23291808 accac 23291812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 940397 - 940287
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||||||| ||| | ||||| |||| ||| || ||||||||||  | ||||||| ||||||    
T  940397 gacaagacgcgaaatcaaacgtcgcacaagacgacaaacaacacaacaccgcacttagacgacggaatcacaaaaaacacaagga-aaaaacttgatata 940299  T
Q  118 tgtgaaaaccac 129  Q
    ||||||||||||    
T  940298 tgtgaaaaccac 940287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 21686907 - 21686832
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa 94  Q
    |||||||||| |||||||||| ||||||||| ||| ||||||||||||||||| ||||| |||||||| |||||||    
T  21686907 gacaaaacgcaaaatcaaacgccgcacaagacgacgaacaacacaacgccgtacttagacgacgaaatcacaaaaa 21686832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 34878336 - 34878541
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||||||||||||||||||  ||||||||| ||| ||||||||||||||||| ||| | |||||| | ||||||| |||     ||||||| ||||| |    
T  34878336 gacaaaacgcgaaatcaaacaccgcacaagacgacgaacaacacaacgccgtacttaaacgacgaagtcacaaaaaaaca-----aaaaacttgatatgt 34878430  T
Q  119 gtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacgaa 216  Q
    |||||||||||       | |  || ||||||  |||||||||||||||  | |||||| |||||| |||||||||||||||||| |||| ||||| |||    
T  34878431 gtgaaaaccacttatttaa-attgaaagaaaa-tggaaaaaagatgtagatgagtgattctaggtcaaaaaatgacctaaaaccacccctcctcgatgaa 34878528  T
Q  217 tgaaagagaaaga 229  Q
     ||||||||||||    
T  34878529 cgaaagagaaaga 34878541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 11462506 - 11462616
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| ||| ||||||||||| ||||||||| ||| ||||||| || |||| | |||||||||||||| |||||||||||| |  ||||||| |||| ||    
T  11462506 gacaagacgtgaaatcaaacgccgcacaagacgacgaacaacaaaatgccggacttagatgacgaaatcacaaaaacacaaaagaaaaaacttgatagat 11462605  T
Q  119 gtgaaaaccac 129  Q
    |||||| ||||    
T  11462606 gtgaaacccac 11462616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 45415592 - 45415398
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| |||||||||||||||  |||||||| ||| ||||||| ||||||| | ||||| |||||||| ||||||| |||  |  ||||||| |||| ||    
T  45415592 gacaagacgcgaaatcaaacgatgcacaagacgacgaacaacaaaacgccgcacttagacgacgaaatcacaaaaaaacacaagaaaaaacttgatagat 45415493  T
Q  119 gtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcga 212  Q
    |||||||||||       | |  || ||||||| |||||||||||||||  |||||||| ||| || |||||||||||||||||| |||| |||||    
T  45415492 gtgaaaaccacttatttaa-attgaaagaaaaggggaaaaaagatgtagaggggtgattctagatcaaaaaatgacctaaaaccacccctcctcga 45415398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 8211980 - 8212079
Alignment:
Q  31 aatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgtgaaaaccac 129  Q
    ||||||||| ||||||||| ||  ||||||||||||||| | ||||| |||||||| || |||||||||| | | |||||| ||||||||||||||||||    
T  8211980 aatcaaacgccgcacaagacgatgaacaacacaacgccgcatttagacgacgaaatcacaaaaaacacaaaagggaaaacttgatatatgtgaaaaccac 8212079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 7836854 - 7836928
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaa 93  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||||||||||| | ||||| || ||||| ||||||    
T  7836854 gacaagacgcgaaatcaaacgtcgcacaagacgacgaacaacacaacgccgcacttagacgatgaaatcacaaaa 7836928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 13144870 - 13144981
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaat-aacaaaaacacaataagaaaaactcgatata 117  Q
    ||||| ||||||||||||| || ||||||||  ||  |||||||||||||| | ||||| |||||||| || |||||||||| | |||||| | ||||||    
T  13144870 gacaagacgcgaaatcaaatgttgcacaagacaacagacaacacaacgccgcatttagacgacgaaatcaaaaaaaacacaaaaggaaaaagttgatata 13144969  T
Q  118 tgtgaaaaccac 129  Q
    | ||||||||||    
T  13144970 tatgaaaaccac 13144981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 35484449 - 35484560
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| |||||||| |||| | ||||||||| ||| ||||||||||||||| | ||||| |||||||  || |||||||||||   ||||||| |||| |    
T  35484449 gacaagacgcgaaagcaaatgacgcacaagacgacgaacaacacaacgccgcacttagacgacgaaaccacaaaaaacacaattgaaaaaacttgataga 35484548  T
Q  118 tgtgaaaaccac 129  Q
    ||||||||||||    
T  35484549 tgtgaaaaccac 35484560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 27580222 - 27580296
Alignment:
Q  55 aacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatatgtgaaaaccac 129  Q
    ||||||||||||||| | ||| | |||||||| ||||||| |||| | |||||||| ||||||||||||||||||    
T  27580222 aacaacacaacgccgcatttaaacgacgaaatcacaaaaatacaaaaggaaaaacttgatatatgtgaaaaccac 27580296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 201
Target Start/End: Complemental strand, 31984176 - 31984030
Alignment:
Q  55 aacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatatgtgaaaaccacnnnnnnnagaacgagagaaaagagg 154  Q
    ||||||||||||||| | ||||| |||||||| ||||||| |||  | |||||||| ||||||||||||||||||       ||| ||| ||||||| |     
T  31984176 aacaacacaacgccgcacttagacgacgaaatcacaaaaa-acacaaggaaaaacttgatatatgtgaaaaccac-ttatttagatcgaaagaaaaggga 31984079  T
Q  155 aaaaaagatgtagcg-ggtgattttaggtc-aaaaatgacctaaaacca 201  Q
    ||||||||||||| | |||| || |||||| ||||||||||||||||||    
T  31984078 aaaaaagatgtagagaggtgcttctaggtcaaaaaatgacctaaaacca 31984030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 51916719 - 51916793
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaa 93  Q
    ||||| ||||||||||||| | ||||||||| ||||||||||| ||| ||||||||||| || ||||| ||||||    
T  51916719 gacaagacgcgaaatcaaatgccgcacaagacgactaacaacataacaccgtaattagacgatgaaatcacaaaa 51916793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 32395029 - 32394921
Alignment:
Q  22 aaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgt 120  Q
    |||||| |||||||||||| |||||||| ||  | ||||||||||||| | ||  | |||||||| || |||||||||| | |||||||| |||| ||||    
T  32395029 aaaacgggaaatcaaacgttgcacaagacgatgagcaacacaacgccgcacttgaacgacgaaatcacaaaaaacacaaaaggaaaaacttgatagatgt 32394930  T
Q  121 gaaaaccac 129  Q
    |||||||||    
T  32394929 gaaaaccac 32394921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 35462118 - 35462206
Alignment:
Q  42 gcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgtgaaaaccac 129  Q
    |||||||| ||| ||||||||||||||| | ||| | |||||||| || |||||||||| | |||||||| |||| |||||||||||||    
T  35462118 gcacaagacgacgaacaacacaacgccgcacttacacgacgaaatcacaaaaaacacaaaaggaaaaacttgatagatgtgaaaaccac 35462206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 49626815 - 49626735
Alignment:
Q  148 aaagaggaaaaaagatgtagcggg-tgattttaggtcaaa-aatgacctaaaaccatcccttctcgacgaatgaaagagaa 226  Q
    |||| |||||||||||| || ||| ||||||||||||||| ||||||||||||||| |||| ||||| || ||||||||||    
T  49626815 aaaggggaaaaaagatgcagaggggtgattttaggtcaaagaatgacctaaaaccacccctcctcgatgagtgaaagagaa 49626735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 14872674 - 14872563
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| ||||||||||||||| ||||||||| ||| |||||||||| |||| | || || ||| |||| || ||||||||||   |||||||| |||||     
T  14872674 gacaagacgcgaaatcaaacgccgcacaagacgacgaacaacacaatgccgcacttggacgacaaaatcacaaaaaacacaaatggaaaaacttgatatt 14872575  T
Q  118 tgtgaaaaccac 129  Q
    ||| ||||||||    
T  14872574 tgtaaaaaccac 14872563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 39888217 - 39888115
Alignment:
Q  28 cgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataaca-aaaacacaataagaaaaactcgatatatgtgaaaac 126  Q
    ||||||||||||  ||| |||| ||  |||| |||||||||| | ||||| |||||||||||| |||||| || |  ||||||| |||||||||||||||    
T  39888217 cgaaatcaaacgctgcagaagacgaagaacaccacaacgccgcacttagacgacgaaataacaaaaaacataaaagaaaaaactagatatatgtgaaaac 39888118  T
Q  127 cac 129  Q
    |||    
T  39888117 cac 39888115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 21686772 - 21686695
Alignment:
Q  153 ggaaaaaagatgtagcgggtgattttaggtcaaaaa-tgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    ||||||||||||||| | |||||| ||| ||||||| |||||||||| |||| || ||||| ||| ||||||||||||    
T  21686772 ggaaaaaagatgtagagagtgattctagatcaaaaaatgacctaaaatcatctctcctcgatgaacgaaagagaaaga 21686695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 21947676 - 21947787
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| ||||||||||||||| ||  | ||| ||| ||||||||| ||| | | ||||| |||||||| || |||||||||| |  ||||||| |||| |    
T  21947676 gacaagacgcgaaatcaaacgccgtccgagacgacgaacaacacagcgctgcacttagacgacgaaatcacaaaaaacacaaaagaaaaaacttgataga 21947775  T
Q  118 tgtgaaaaccac 129  Q
    ||||||||||||    
T  21947776 tgtgaaaaccac 21947787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 27580322 - 27580385
Alignment:
Q  155 aaaaaagatgtagcggg-tgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaat 217  Q
    ||||||||||||| ||| ||||| ||||||||||||||||  |||||||| |||| ||||||||    
T  27580322 aaaaaagatgtagagggatgattctaggtcaaaaatgacccgaaaccatctcttcccgacgaat 27580385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 50377362 - 50377287
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa 94  Q
    ||||| ||||||||||||| | | || || | ||| ||||||||||||||||| ||||| |||||||| |||||||    
T  50377362 gacaagacgcgaaatcaaatgccacaaaaaacgacgaacaacacaacgccgtacttagacgacgaaatcacaaaaa 50377287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 15836220 - 15836115
Alignment:
Q  25 acgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgtgaa 123  Q
    |||||||||||||||  |||||||| ||| |||||||||| | |  | ||||| ||| |||| || |||||||||| | |||| ||| ||| ||||||||    
T  15836220 acgcgaaatcaaacgctgcacaagacgacgaacaacacaatgtcacacttagacgacaaaatcacgaaaaacacaaaacgaaacacttgatgtatgtgaa 15836121  T
Q  124 aaccac 129  Q
    ||||||    
T  15836120 aaccac 15836115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 32679324 - 32679369
Alignment:
Q  184 aaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    ||||||||| |||||||| |||| |||||||| |||||||||||||    
T  32679324 aaaaatgacataaaaccacccctcctcgacgagtgaaagagaaaga 32679369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 34479519 - 34479414
Alignment:
Q  25 acgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgtgaa 123  Q
    ||||||||||||||| | || |||| ||| ||||| |||||||| || | ||| || ||||| || |||||||||| |  ||||||| ||||| ||||||    
T  34479519 acgcgaaatcaaacgccacataagacgacgaacaatacaacgccatactcagacgaggaaatcacaaaaaacacaaaataaaaaacttgatatgtgtgaa 34479420  T
Q  124 aaccac 129  Q
    ||||||    
T  34479419 aaccac 34479414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 10776654 - 10776730
Alignment:
Q  155 aaaaaagatgtagc-gggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    |||||||||||||  |||||||| |||||| |||||||| ||||||||| || | ||||| ||||||| ||||||||    
T  10776654 aaaaaagatgtagatgggtgattctaggtcaaaaaatgatctaaaaccacccttcctcgatgaatgaaggagaaaga 10776730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 22611234 - 22611023
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    |||||||||| |||||||||| ||||||||| ||| ||||||||||||||| | ||||| |||||||| || |||||||||| | || ||||| |||| |    
T  22611234 gacaaaacgcaaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggataaacttgataga 22611135  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaa 216  Q
    ||||||||||||       |||  || ||||||| |||||||||||||||  |||||||| |||||||||||||||||||||||| |||| |||||||||    
T  22611134 tgtgaaaaccac-ttatttagattgaaagaaaaggggaaaaaagatgtagatgggtgattctaggtcaaaaatgacctaaaaccacccctcctcgacgaa 22611036  T
Q  217 tgaaagagaaaga 229  Q
     ||| ||||||||    
T  22611035 cgaaggagaaaga 22611023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 54021911 - 54021728
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| || |||||||||||| ||||||||| |||||||||||||| |||| |||||||  ||||||| |||||||||||| | |||||||| |||||||    
T  54021911 gacaagacacgaaatcaaacgccgcacaagacgactaacaacacaatgccgcaattagacaacgaaatcacaaaaacacaaaaggaaaaactggatatat 54021812  T
Q  119 gtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtagcggg-tgattttaggtc-aaaaatgacctaaaacca 201  Q
    |||||||||||       |||  || ||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||||    
T  54021811 gtgaaaaccac-ttatttagattgaaagaaaagaggaaaaaagatgtagagggatgattttatgtcaaaaaatgacctaaaacca 54021728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 201
Target Start/End: Original strand, 10258960 - 10259136
Alignment:
Q  25 acgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatatgtgaaa 124  Q
    |||||||||||||| || || ||||  ||||||||||||| |||  |||||||||||||||| |||||||| ||| | | |||||| |||||||||||||    
T  10258960 acgcgaaatcaaacatcacataagaccactaacaacacaatgccacaattagatgacgaaatcacaaaaactcaaaagggaaaacttgatatatgtgaaa 10259059  T
Q  125 accacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtcaaaaatgacctaaaacca 201  Q
    ||||        ||| ||| ||||||||| ||||| |||||||  |||||||||||||||||||||||||||||||||    
T  10259060 acca-tttgtttagatcgaaagaaaagagaaaaaacgatgtagaggggtgattttaggtcaaaaatgacctaaaacca 10259136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 229
Target Start/End: Original strand, 21686306 - 21686510
Alignment:
Q  25 acgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgtgaa 123  Q
    ||||||||||||||| ||||||||| ||| |||||||| |||||| | ||||| |||||||| || |||||||||| | |||||||| |||| |||||||    
T  21686306 acgcgaaatcaaacgccgcacaagacgacgaacaacac-acgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatagatgtgaa 21686404  T
Q  124 aaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaatgaaag 222  Q
    ||||||       |||  || ||||||| |||||||||||||||  |||||||||||||||||||| ||||| |||||| |||| ||||| |||  || |    
T  21686405 aaccac-ttatttagattgaaagaaaaggggaaaaaagatgtagaggggtgattttaggtcaaaaaagacctcaaaccacccctcctcgatgaacaaagg 21686503  T
Q  223 agaaaga 229  Q
    |||||||    
T  21686504 agaaaga 21686510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 32766565 - 32766355
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataa-gaaaaactcgatata 117  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||| ||| | ||||| |||||||| |||||||  ||| || |||||||| |||| |    
T  32766565 gacaaaacgcgaaatcaaacgccgcacaagacgacgaacaacacaacaccgcacttagacgacgaaatcacaaaaaaccaaaaaggaaaaacttgataga 32766466  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacga 215  Q
    |||||||| |||       |||  || ||||||| |||||||||||||||  |||||||| |||||| |||||||||||||||||| ||| |||| | ||    
T  32766465 tgtgaaaaacac-ttacttagattgaaagaaaaggggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccaccccctctcaatga 32766367  T
Q  216 atgaaagagaaa 227  Q
    | ||| ||||||    
T  32766366 acgaaggagaaa 32766355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 53811079 - 53810867
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||| ||||||| | |||||||||||||| || |||||||||| | ||| |||| |||| |    
T  53811079 gacaaaacgcgaaatcaaacgccgcacaagacgacgaacaacaaaacgccgcatttagatgacgaaatgacaaaaaacacaaaaggaataacttgataga 53810980  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacga 215  Q
    |||||||| |||       | |  || ||||||| || ||||||||||||  |||||||| |||||| |||||||||||||||||| |||| ||||| ||    
T  53810979 tgtgaaaatcacttatttaa-attgaaagaaaagggggaaaaagatgtagaggggtgattataggtcaaaaaatgacctaaaaccacccctcctcgatga 53810881  T
Q  216 atgaaagagaaaga 229  Q
    | ||| ||| ||||    
T  53810880 acgaaggaggaaga 53810867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 2520830 - 2520616
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaaca--acacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgata 115  Q
    ||||||||||||||||||||| ||||||||| ||| ||||  ||||||| ||| | ||||| |||||||| || |||||||||| |  ||||||| ||||    
T  2520830 gacaaaacgcgaaatcaaacgccgcacaagacgacgaacaacacacaacaccgcacttagacgacgaaatcacaaaaaacacaaaagaaaaaacttgata 2520731  T
Q  116 tatgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgac 213  Q
     |||||||||||||       |||  ||  |||||| |||||||||||||||  |||||||| |||||| |||||||||||||||||| |||| |||||     
T  2520730 gatgtgaaaaccac-ttatttagattgaacgaaaaggggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctcctcgat 2520632  T
Q  214 gaatgaaagagaaaga 229  Q
    ||| ||| ||||||||    
T  2520631 gaacgaaggagaaaga 2520616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 19853568 - 19853781
Alignment:
Q  17 gtgacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaa-ctcgata 115  Q
    |||| ||||||| |||||||| | | || |||| ||| ||||||||||||||| | ||||| |||||||| |||||||   || |||||||| || ||||    
T  19853568 gtgataaaacgcaaaatcaaatgccacataagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacaaaaaagaaaaaacttgata 19853667  T
Q  116 tatgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtagcggg-tgattttaggtcaaaaatgacctaaaaccatcccttctcgacg 214  Q
     |||||||||||||       |||  |  ||||||| ||||||||||||||| ||| ||||| |||||||||||||||||||||||| |||| ||||| |    
T  19853668 gatgtgaaaaccacttattt-agattggaagaaaaggggaaaaaagatgtagaggggtgattctaggtcaaaaatgacctaaaaccacccctcctcgatg 19853766  T
Q  215 aatgaaagagaaaga 229  Q
    |||||| | ||||||    
T  19853767 aatgaaggggaaaga 19853781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 17949382 - 17949493
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    |||||||||| |||||||||| ||||||| | ||| ||||||||||||||| | ||||| |||||||| || |||||||||| | |||||||| |||||     
T  17949382 gacaaaacgcaaaatcaaacgccgcacaacacgacaaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatatg 17949481  T
Q  118 tgtgaaaaccac 129  Q
    ||||||||||||    
T  17949482 tgtgaaaaccac 17949493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 17953234 - 17953345
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    |||||||||| |||||||||| ||||||| | ||| ||||||||||||||| | ||||| |||||||| || |||||||||| | |||||||| |||||     
T  17953234 gacaaaacgcaaaatcaaacgccgcacaacacgacaaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatatg 17953333  T
Q  118 tgtgaaaaccac 129  Q
    ||||||||||||    
T  17953334 tgtgaaaaccac 17953345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 4142810 - 4143024
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgc---acaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgat 114  Q
    |||||||| |||||||||||| |||   |||||| ||| ||||||||||||||| | ||||| |||||||| || |||||||||| | |||||||| |||    
T  4142810 gacaaaacacgaaatcaaacgccgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgat 4142909  T
Q  115 atatgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcga 212  Q
    | ||||||||| |||       |||  || ||||||| |||||||||||||||  |||||||| |||||| |||||||||||||||||| |||| |||||    
T  4142910 agatgtgaaaa-cac-ttatttagattgaaagaaaaggggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctcctcga 4143007  T
Q  213 cgaatgaaagagaaaga 229  Q
     |||  || ||||||||    
T  4143008 tgaacaaaggagaaaga 4143024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 29120420 - 29120532
Alignment:
Q  18 tgacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatat 116  Q
    |||||| |||||||||||||||||| |||||| ||  ||||||||| ||||| | ||||| |||||||| || |||||||||| ||||||||   |||||    
T  29120420 tgacaagacgcgaaatcaaacgtcgtacaagacgatgaacaacacagcgccgcacttagacgacgaaatcacaaaaaacacaaaaagaaaaatcggatat 29120519  T
Q  117 atgtgaaaaccac 129  Q
    |||||||||||||    
T  29120520 atgtgaaaaccac 29120532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 13634166 - 13634055
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| |||||||||| ||| |||||||||| ||| ||||||||||||||| | ||||| |||||||| || |||||||||| |  ||||||| |||| |    
T  13634166 gacaagacgcgaaatctaacctcgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaagaaaaaacttgataga 13634067  T
Q  118 tgtgaaaaccac 129  Q
    ||||||||||||    
T  13634066 tgtgaaaaccac 13634055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 43510248 - 43510066
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    |||||||| |||||||||||| ||||||||| ||| || |||||||||||| | ||||| |||||||| ||||||| || | | |||||||| |||| ||    
T  43510248 gacaaaacacgaaatcaaacgccgcacaagacgacaaataacacaacgccgcacttagacgacgaaatcacaaaaa-acgaaaggaaaaacttgataaat 43510150  T
Q  119 gtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtagcgg-gtgattttaggtc-aaaaatgacctaaaacca 201  Q
    |||||| ||||       |||  || ||||||| | ||||||||||||| || |||||| |||||| ||||||||||||||||||    
T  43510149 gtgaaagccac-ttatttagattgaaagaaaagggaaaaaaagatgtagaggagtgattctaggtcaaaaaatgacctaaaacca 43510066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 198
Target Start/End: Complemental strand, 35348349 - 35348176
Alignment:
Q  28 cgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaat----aacaaaaacacaataagaaaaactcgatatatgtgaa 123  Q
    |||||||||||| ||||||||| ||| ||||||||||||||| | ||||| ||||||||    || |||||||||| |||||||||| ||||| ||||||    
T  35348349 cgaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaaaaacacaa-aagaaaaacttgatatttgtgaa 35348251  T
Q  124 aaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtagcg-ggtgattttaggtc-aaaaatgacctaaaa 198  Q
    ||||||       |||  || ||||||| ||||||||||||||| | ||||||| |||||| |||||||||||||||    
T  35348250 aaccac-ttatttagattgaaagaaaag-ggaaaaaagatgtagagaggtgattctaggtcaaaaaatgacctaaaa 35348176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 43095681 - 43095570
Alignment:
Q  17 gtgacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatat 116  Q
    ||||||| ||||||||||||||  || |||||| |||||||||||||| |  | |||||||  ||| ||| |||||| ||||| || |||||||||||||    
T  43095681 gtgacaagacgcgaaatcaaacaccgtacaagacgactaacaacacaatgttgcaattagactacggaatcacaaaagcacaacaa-aaaaactcgatat 43095583  T
Q  117 atgtgaaaaccac 129  Q
    |||||||||||||    
T  43095582 atgtgaaaaccac 43095570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 11300049 - 11300159
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaac--acaataagaaaaactcgatat 116  Q
    ||||| |||||||||||||||| |||||||| ||| ||||||||||| ||| | ||||| |||||||| ||||||||  ||||    ||||||| |||||    
T  11300049 gacaagacgcgaaatcaaacgttgcacaagacgacgaacaacacaacaccgcacttagacgacgaaatcacaaaaacatacaaacgaaaaaacttgatat 11300148  T
Q  117 atgtgaaaacc 127  Q
    |||||||||||    
T  11300149 atgtgaaaacc 11300159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 33921102 - 33920995
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa-cacaataagaaaaactcgatata 117  Q
    ||||| ||| |||||||||||||||| |||| | | ||||||||||||||| | ||||| |||||||| ||||||| ||||| |  ||||||| ||||||    
T  33921102 gacaagacgtgaaatcaaacgtcgcataagacggcgaacaacacaacgccgcacttagacgacgaaatcacaaaaagcacaaaagaaaaaacttgatata 33921003  T
Q  118 tgtgaaaa 125  Q
    ||||||||    
T  33921002 tgtgaaaa 33920995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 56040704 - 56040813
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| |||| |||| ||||| ||||||||| ||| ||||||| ||||||| | ||| | |||||||| |||||||||||| || ||||||| |||| ||    
T  56040704 gacaagacgcaaaattaaacgccgcacaagacgacgaacaacaaaacgccgcacttaaacgacgaaatcacaaaaacacaagaa-aaaaacttgatagat 56040802  T
Q  119 gtgaaaaccac 129  Q
    |||||||||||    
T  56040803 gtgaaaaccac 56040813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 26633729 - 26633840
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| ||||||| || || | ||||||||| ||| ||||||||||||||| | ||||| |||||||| || |||||||||| |  ||||||| |||| |    
T  26633729 gacaagacgcgaagtccaatgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaagaaaaaacttgataga 26633828  T
Q  118 tgtgaaaaccac 129  Q
    ||||||||||||    
T  26633829 tgtgaaaaccac 26633840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 53444169 - 53444094
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa 94  Q
    |||||||||||||||||||   ||||||||| ||| |||||||||||| |||| ||||| |||||||| |||||||    
T  53444169 gacaaaacgcgaaatcaaataccgcacaagacgacgaacaacacaacgtcgtacttagacgacgaaatcacaaaaa 53444094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 5119379 - 5119279
Alignment:
Q  30 aaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataaca-aaaacacaataagaaaaactcgatatatgtgaaaacca 128  Q
    |||||||||| |||| ||||  || ||||||||||  ||| | ||||| |||||||| ||| ||||||||| | |||||||| |||||||||||||||||    
T  5119379 aaatcaaacgccgcaaaagacaacgaacaacacaataccgcacttagacgacgaaatcacacaaaacacaaaaggaaaaacttgatatatgtgaaaacca 5119280  T
Q  129 c 129  Q
    |    
T  5119279 c 5119279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 8670529 - 8670461
Alignment:
Q  26 cgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa 94  Q
    |||||||||||||  ||||||||||||||||||||||||||||| | ||| | ||| |||| |||||||    
T  8670529 cgcgaaatcaaacaccgcacaagatgactaacaacacaacgccgcacttacacgacaaaatcacaaaaa 8670461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 37030302 - 37030207
Alignment:
Q  29 gaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatatgtgaaaa 125  Q
    ||||||||||| |  |||||| ||| ||||||||||||||||| | |||||||||||| ||||||| || | || ||||||| ||||| ||||||||    
T  37030302 gaaatcaaacgccatacaagacgacgaacaacacaacgccgtactcagatgacgaaatcacaaaaagac-acaataaaaacttgatatgtgtgaaaa 37030207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 9178404 - 9178329
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa 94  Q
    ||||| ||||||||||||||| | ||||||||||| ||||| |||||| || | |||||||| ||||| |||||||    
T  9178404 gacaagacgcgaaatcaaacgccacacaagatgacgaacaatacaacgtcgcacttagatgatgaaatcacaaaaa 9178329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 22300745 - 22300686
Alignment:
Q  169 gggtgattttaggtcaaaaa-tgacctaaaaccatcccttctcgacgaatgaaagagaaa 227  Q
    |||||||||||||||||||| |||||||||||||  ||| |||||||| |||||||||||    
T  22300745 gggtgattttaggtcaaaaaatgacctaaaaccactcctcctcgacgagtgaaagagaaa 22300686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 40066121 - 40066224
Alignment:
Q  27 gcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataaca-aaaacacaataagaaaaactcgatatatgtgaaaa 125  Q
    |||||||||||||  ||| |||| ||| ||||||||||||||| | ||||| || ||||| ||| ||||||||| | ||||||||  | |||||||||||    
T  40066121 gcgaaatcaaacgctgcataagacgacgaacaacacaacgccgcacttagacgatgaaatcacataaaacacaaaaggaaaaacttaaaatatgtgaaaa 40066220  T
Q  126 ccac 129  Q
    ||||    
T  40066221 ccac 40066224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 56156700 - 56156775
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa 94  Q
    ||||| ||||||||||||||| | ||||||| ||| ||||||||||||||  | ||||| |||||||| |||||||    
T  56156700 gacaagacgcgaaatcaaacgccacacaagacgacgaacaacacaacgccacacttagacgacgaaatcacaaaaa 56156775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 201
Target Start/End: Complemental strand, 45418540 - 45418393
Alignment:
Q  56 acaacacaacgccgtaattagatgacgaaataacaaaaa-cacaataagaaaaactcgatatatgtgaaaaccacnnnnnnnagaacgagagaaaagagg 154  Q
    |||| ||||| ||||| ||||| |||||||| ||||||| ||||| | |||||||| |||||||||||||||| |       | |  |||||||||||||    
T  45418540 acaatacaacaccgtacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatatatgtgaaaacctc-ttatttatattgagagaaaagagg 45418442  T
Q  155 aaaaaagatgtagcggg-tgattttaggtc-aaaaatgacctaaaacca 201  Q
    |||| || ||||| ||| ||||| |||||| ||||||||||||||||||    
T  45418441 aaaagaggtgtagagggatgattctaggtcaaaaaatgacctaaaacca 45418393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 36204590 - 36204650
Alignment:
Q  169 gggtgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    |||||||| ||||| ||||||||||||||||||||| | || || || |||||||||||||    
T  36204590 gggtgattctaggtaaaaaatgacctaaaaccatccatccttgatgattgaaagagaaaga 36204650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 10496258 - 10496209
Alignment:
Q  153 ggaaaaaagatgtagcgggtgattttaggtcaaaaa-tgacctaaaacca 201  Q
    ||||||||||||||  |||||||| ||||||||||| |||||||||||||    
T  10496258 ggaaaaaagatgtatagggtgattctaggtcaaaaattgacctaaaacca 10496209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 22038991 - 22039068
Alignment:
Q  153 ggaaaaaagatgtagcgggtgattttaggtcaaaaat-gacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    |||||||||||| |  |||||||| ||| || ||||| |||||||||||| |||| ||||| || |||||||||||||    
T  22038991 ggaaaaaagatgcaaagggtgattctagatccaaaattgacctaaaaccacccctgctcgatgagtgaaagagaaaga 22039068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 51888441 - 51888486
Alignment:
Q  184 aaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    |||||||||||||||||| |||| ||||| || |||||||||||||    
T  51888441 aaaaatgacctaaaaccacccctcctcgatgagtgaaagagaaaga 51888486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 52978734 - 52978689
Alignment:
Q  158 aaagatgtagcgggtgattttaggtcaaaaatgacctaaaaccatc 203  Q
    |||||||||  | |||||||||||||||||||||| ||||||||||    
T  52978734 aaagatgtaaagcgtgattttaggtcaaaaatgacataaaaccatc 52978689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 22558651 - 22558735
Alignment:
Q  147 aaaagaggaaaaaagatgtagcg-ggtgattttaggtcaaaa-atgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    ||||| ||||||||||||||| | ||||||| || ||||||| |||||||||||||| |||| ||| | ||| ||| ||||||||    
T  22558651 aaaaggggaaaaaagatgtagagaggtgattctatgtcaaaaaatgacctaaaaccacccctcctcaatgaacgaaggagaaaga 22558735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 24099254 - 24099313
Alignment:
Q  145 agaaaagaggaaaaaagatgtagcggg-tgattttaggtc--aaaaatgacctaaaacca 201  Q
    ||||||| ||||||||||||||| ||| ||||| ||||||  ||||||||||||||||||    
T  24099254 agaaaaggggaaaaaagatgtagagggatgattctaggtcaaaaaaatgacctaaaacca 24099313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 47320612 - 47320668
Alignment:
Q  171 gtgattttaggtcaaa-aatgacctaaaaccatcccttctcgacgaatgaaagagaa 226  Q
    ||||||||| |||||| ||||||||||||||| |||||||||| ||  |||||||||    
T  47320612 gtgattttaagtcaaagaatgacctaaaaccaccccttctcgatgagcgaaagagaa 47320668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 9998497 - 9998285
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||||||| | ||||| |||||||| |||||||||||| | |||||||| |||| |     
T  9998497 gacaaaacgcgaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaacacaaaatgaaaaacttgatagac 9998398  T
Q  119 gtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc--aaaaatgacctaaaaccatcccttctcgacga 215  Q
    |||||||||||       |||  || ||||||| |||||||||||||||  |||||||| ||||||  |||||||||||||||||| |||| ||||| ||    
T  9998397 gtgaaaaccac-ttatttagattgaaagaaaaggggaaaaaagatgtagaggggtgattctaggtcaaaaaaatgacctaaaaccacccctcctcgatga 9998299  T
Q  216 atgaaagagaaaga 229  Q
    | ||| ||||||||    
T  9998298 acgaaggagaaaga 9998285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 10229506 - 10229293
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||| | ||||| |||||||| |||||||||||| | |||||||| |||| |     
T  10229506 gacaaaacgcgaaatcaaacgccgcacaagatgacgaacaacacaacgccgcacttagaagacgaaatcacaaaaacacaaaaggaaaaacttgatagac 10229407  T
Q  119 gtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtagcg-ggtgattttaggtc---aaaaatgacctaaaaccatcccttctcgacg 214  Q
    |||||||||||       |||  || ||||||| ||||||||||||||| | ||||||| ||||||   ||||| |||||||||||| |||| ||||| |    
T  10229406 gtgaaaaccac-ttatttagattgaaagaaaaggggaaaaaagatgtagagtggtgattctaggtccaaaaaaaagacctaaaaccacccctcctcgatg 10229308  T
Q  215 aatgaaagagaaaga 229  Q
    || ||| ||||||||    
T  10229307 aaagaaggagaaaga 10229293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 10233100 - 10232889
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||||||| | ||||| |||||||| |||||||||||| | |||||||| |||| |     
T  10233100 gacaaaacgcgaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaacacaaaaggaaaaacttgatagac 10233001  T
Q  119 gtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacgaa 216  Q
    |||||||||||       |||  || ||||||| |||||||||||||||  |||||||| |||||| |||||||||||||||||| |||| || || |||    
T  10233000 gtgaaaaccac-ttatttagattgaaagaaaaggggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctccttgatgaa 10232902  T
Q  217 tgaaagagaaaga 229  Q
     ||| ||||||||    
T  10232901 cgaaggagaaaga 10232889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 10108266 - 10108057
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||||||| | ||||| |||||||| |||||||||||| | |||||||| |||| |     
T  10108266 gacaaaacgcgaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaacacaaaaggaaaaacttgatagac 10108167  T
Q  119 gtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaat 217  Q
    |||||||||||       |||  || ||||||| |||||||||||||||  |||||||| |||||| ||||||||||||||||| |||| ||||| |||     
T  10108166 gtgaaaaccac-ttatttagattgaaagaaaaggggaaaaaagatgtagaggggtgattctaggtc-aaaatgacctaaaaccacccctcctcgatgaac 10108069  T
Q  218 gaaagagaaaga 229  Q
     || ||||||||    
T  10108068 aaaggagaaaga 10108057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 229
Target Start/End: Original strand, 35864996 - 35865203
Alignment:
Q  25 acgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataaca----aaaacacaataagaaaaactcgatatatgt 120  Q
    |||| |||||||||| | ||||||| ||||||||||||||||||| ||||||| |||||||| |||    ||||||||| |||||||||| |||||||||    
T  35864996 acgcaaaatcaaacgccacacaagacgactaacaacacaacgccgcaattagacgacgaaatcacaaattaaaacacaa-aagaaaaacttgatatatgt 35865094  T
Q  121 gaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaatga 219  Q
    |||||| ||       |||  || |||||||||||||||||||||||  || ||||||||| |||||||||||||||||||| |||| ||||| ||| ||    
T  35865095 gaaaactac-ttatttagattgaaagaaaagaggaaaaaagatgtagaaggatgattttagatcaaaaatgacctaaaaccacccctcctcgaggaacga 35865193  T
Q  220 aagagaaaga 229  Q
    | ||||||||    
T  35865194 aggagaaaga 35865203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 229
Target Start/End: Complemental strand, 21431639 - 21431444
Alignment:
Q  35 aaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa-cacaataagaaaaactcgatatatgtgaaaaccacnnnn 133  Q
    ||||| ||||||||| ||| |||||||||| |||| | ||||| | |||||| ||||||| ||||| |||||||||| |||| |||||||||||||        
T  21431639 aaacgccgcacaagacgacgaacaacacaatgccgcacttagacggcgaaatcacaaaaaacacaaaaagaaaaacttgatagatgtgaaaaccacttat 21431540  T
Q  134 nnnagaacgagagaaaagaggaaaaaagatgtagcggg-tgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
       |||  || ||||||  ||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| ||||| ||| ||| ||||||||    
T  21431539 tt-agattgaaagaaaatgggaaaaaagatgtagaggggtgattttaggtcaaaaatgacctaaaaccacccctcctcgatgaacgaaggagaaaga 21431444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 6954752 - 6954935
Alignment:
Q  17 gtgacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgata 115  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||| | ||||| |||||||| || |||||||||| | |||||||| ||||    
T  6954752 gtgacaaaacgcgaaatcaaacgccgcacaagacgacgaacaatacaacgccgcacttagacgacgaaatcacaaaaaacacaaaatgaaaaacttgata 6954851  T
Q  116 tatgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaa 198  Q
     |||||||| ||||       |||  || ||||||| |||||||||||||||  |||||||| |||||| |||||||||||||||    
T  6954852 gatgtgaaacccac-ttatttagattgaaagaaaaggggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaa 6954935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 23799968 - 23800151
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| ||||||||||||||| ||||||||| |||||| |||||||||||| ||||||| |||||||| ||||||||| || | |  ||||| |||||||    
T  23799968 gacaagacgcgaaatcaaacgccgcacaagacgactaagaacacaacgccgcaattagacgacgaaatcacaaaaacaaaaaagggcaaacttgatatat 23800067  T
Q  119 gtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaacca 201  Q
    || ||||||||       |||  || |||||||||||||||||||||||  | || |||||||||| |||||| |||||||||||    
T  23800068 gtaaaaaccac-ttatttagattgaaagaaaagaggaaaaaagatgtagaagagtaattttaggtcaaaaaataacctaaaacca 23800151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 45568501 - 45568714
Alignment:
Q  17 gtgacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatat 116  Q
    ||||||| ||||||||||||||| | ||||||| ||| ||||||||||||||| | ||||| |||||||| ||||||||| || |  ||||||| ||||     
T  45568501 gtgacaagacgcgaaatcaaacgccacacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaacagaaaagaaaaaacttgatag 45568600  T
Q  117 atgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacg 214  Q
    |||||||||| ||       |||  || ||||||| |||||||||||||||  || | ||| ||| || |||||||||||||||||| |||| ||||| |    
T  45568601 atgtgaaaacaac-ttatttagattgaaagaaaaggggaaaaaagatgtagatggattattctagatcaaaaaatgacctaaaaccacccctcctcgatg 45568699  T
Q  215 aatgaaagagaaaga 229  Q
    || ||| ||||||||    
T  45568700 aacgaaggagaaaga 45568714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 36461489 - 36461673
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| ||||||||||||||| ||||||||| ||| ||||||||||||||| | ||||| |||||||| || |||||||||| |  ||||||| |||| |    
T  36461489 gacaagacgcgaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaagaaaaaacttgataga 36461588  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaacca 201  Q
    |||||||| |||       |||  || ||||||| |||||||||||||||  |||||| | |||||| ||||||||||||||||||    
T  36461589 tgtgaaaatcac-ttatttagattgaaagaaaaggggaaaaaagatgtagaggggtgaatataggtcaaaaaatgacctaaaacca 36461673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 46220703 - 46220630
Alignment:
Q  26 cgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaa 99  Q
    ||||||||||||| || |||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||    
T  46220703 cgcgaaatcaaacatcacacaagatgactaacaacacaacgtcgcaattagatgacgaaatcacataaacacaa 46220630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 53099820 - 53099723
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatat 116  Q
    ||||| ||| ||||||||||| |||||||||||||||||||||||||| |  ||||||| |||||||| |||||||||||| |  ||||||| |||||    
T  53099820 gacaagacgtgaaatcaaacgccgcacaagatgactaacaacacaacgtcacaattagacgacgaaatcacaaaaacacaaaagtaaaaacttgatat 53099723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 229
Target Start/End: Complemental strand, 40556735 - 40556530
Alignment:
Q  26 cgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataaca-aaaacacaataagaaaaactcgatatatgtgaaa 124  Q
    |||||||||||||| ||||||||| ||| ||||||||||||||| | ||||| |||||||| ||| ||||||||| | | |||||| |||| || |||||    
T  40556735 cgcgaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacataaaacacaaaagggaaaacttgatagatatgaaa 40556636  T
Q  125 accacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacgaatgaaag 222  Q
    |||||       | | | | ||||||| | ||||||||||| |  |||||||| |||||| |||||||||||||||||| |||| ||||| ||| ||| |    
T  40556635 accac-ttatttatatcaaaagaaaagggaaaaaaagatgtggaggggtgattctaggtcaaaaaatgacctaaaaccacccctcctcgatgaacgaatg 40556537  T
Q  223 agaaaga 229  Q
    |||||||    
T  40556536 agaaaga 40556530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 52923175 - 52923355
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaa-acacaataagaaaaactcgatata 117  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||| ||||  | ||||| ||| ||||  ||||| |||||| | |||||||| |||| |    
T  52923175 gacaaaacgcgaaatcaaacgccgcacaagacgacgaacaacacagcgccacacttagacgacaaaatcccaaaagacacaaaaggaaaaacttgataga 52923274  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtcaaaaatgacctaaaac 199  Q
    ||||||||||||       |||  || ||||||| |||||||||||||||  |||||||| ||||||||||||||| ||||||    
T  52923275 tgtgaaaaccac-ttatttagattgaaagaaaag-ggaaaaaagatgtagaggggtgattctaggtcaaaaatgacttaaaac 52923355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 9320086 - 9319976
Alignment:
Q  20 acaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaat-aacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||||||| |||||||||||||||||||| ||| |||||||||| |||| | |||||  ||||||| |  |||||||||| | |||||||| |||| ||    
T  9320086 acaaaacgcaaaatcaaacgtcgcacaagacgacgaacaacacaatgccgcatttagacaacgaaatcataaaaaacacaaaaggaaaaacttgatagat 9319987  T
Q  119 gtgaaaaccac 129  Q
    |||||||||||    
T  9319986 gtgaaaaccac 9319976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 43488649 - 43488827
Alignment:
Q  20 acaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatat 118  Q
    |||| ||||||||||||||| ||||||||| ||| ||||||||||||||  | ||||| |||||||| || ||||||||||    ||||||| |||| ||    
T  43488649 acaagacgcgaaatcaaacgccgcacaagacgacgaacaacacaacgccacacttagacgacgaaatcacaaaaaacacaaatgaaaaaacttgatagat 43488748  T
Q  119 gtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtcaaaaatgacctaaa 197  Q
    |||||||||||       |||  || ||||||  |||||||||||||||  |||||||| ||||||||||| ||||||||    
T  43488749 gtgaaaaccac-ttatttagattgaaagaaaaagggaaaaaagatgtagaggggtgattctaggtcaaaaaagacctaaa 43488827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 4821710 - 4821626
Alignment:
Q  147 aaaagaggaaaaaagatgtagcgg-gtgattttaggtcaaaaa-tgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    ||||||||||||  |||| || || |||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  4821710 aaaagaggaaaatggatgcagaggagtgattataggtcaaaaaatgacctaaaaccaccccttctcgacgaatgaaagagaaaga 4821626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 47042110 - 47042182
Alignment:
Q  22 aaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa 94  Q
    |||||||||||||||||| ||||||||| ||| |||||||||||| |||| ||||| |||||||| |||||||    
T  47042110 aaaacgcgaaatcaaacgccgcacaagacgacgaacaacacaacgtcgtacttagacgacgaaatcacaaaaa 47042182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 48650792 - 48651005
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| ||||||||||||| | |||||||||  || |||||||||| |||| | ||||| ||| |||| || |||||||||| | |||||||| |||| |    
T  48650792 gacaagacgcgaaatcaaatgccgcacaagacaacgaacaacacaatgccgcacttagacgacaaaatcacaaaaaacacaaaaggaaaaacttgataga 48650891  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagagg-aaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacg 214  Q
    ||||||||||||       |||  || ||||||| || ||||||||||| |  ||||||||||||||| |||||||||||||||||| |||| ||||| |    
T  48650892 tgtgaaaaccac-ttatacagattgaaagaaaaggggaaaaaaagatgtcgaggggtgattttaggtcaaaaaatgacctaaaaccacccctcctcgatg 48650990  T
Q  215 aatgaaagagaaaga 229  Q
    || ||  ||||||||    
T  48650991 aacgatggagaaaga 48651005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 12149842 - 12149953
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa-cacaataagaaaaactcgatata 117  Q
    ||||| |||||||||||||||  |||||||| ||  ||||| ||||||||| | |||||||||||||| ||||||| ||||| |  ||||||| ||||||    
T  12149842 gacaagacgcgaaatcaaacgctgcacaagacgatgaacaatacaacgccgcacttagatgacgaaatcacaaaaatcacaaaagcaaaaactggatata 12149941  T
Q  118 tgtgaaaaccac 129  Q
    ||| ||||||||    
T  12149942 tgtaaaaaccac 12149953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 20987857 - 20987964
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| ||||||||||||| | | ||||||| |||||| |||||||| ||| ||||||| |||||||| || |||||||||| |  ||||||||||||||    
T  20987857 gacaagacgcgaaatcaaatgccacacaagacgactaagaacacaacaccgcaattagacgacgaaatcacaaaaaacacaaaagaaaaaactcgatata 20987956  T
Q  118 tgtgaaaa 125  Q
    | ||||||    
T  20987957 tttgaaaa 20987964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 38545829 - 38545754
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa 94  Q
    ||||| ||||||||||||||| ||||||||| ||| |||||||||||| |||| ||||| |||||||| |||||||    
T  38545829 gacaagacgcgaaatcaaacgccgcacaagacgacgaacaacacaacgtcgtacttagacgacgaaatcacaaaaa 38545754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 20608957 - 20609031
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaa 93  Q
    ||||| |||| |||||||| | ||||||||| ||||||||||||||||||| ||||||| |||||||| ||||||    
T  20608957 gacaagacgcaaaatcaaatgccgcacaagacgactaacaacacaacgccgcaattagacgacgaaatcacaaaa 20609031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 38860178 - 38860288
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| |||||||||||| || ||||||||| ||| ||||||| |||| || | ||||| |||||||| ||||||||||||    ||||||| |||| ||    
T  38860178 gacaagacgcgaaatcaatcgccgcacaagacgacgaacaacaaaacgtcgcacttagacgacgaaatcacaaaaacacaaaggaaaaaacttgatagat 38860277  T
Q  119 gtgaaaaccac 129  Q
    |||||||||||    
T  38860278 gtgaaaaccac 38860288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 12050716 - 12050816
Alignment:
Q  29 gaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataaga-aaaactcgatatatgtgaaaacc 127  Q
    ||||||||||| ||||||||| ||| ||||||| |||||||   ||||| |||||||| |||||||||||| |||| |||||| |||| |||||||||||    
T  12050716 gaaatcaaacgccgcacaagacgacgaacaacaaaacgccgcgcttagacgacgaaatcacaaaaacacaa-aagataaaacttgatagatgtgaaaacc 12050814  T
Q  128 ac 129  Q
    ||    
T  12050815 ac 12050816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 40487356 - 40487244
Alignment:
Q  19 gacaaaacgcgaaatcaaa-cgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatat 116  Q
    ||||| ||||||||||||| || ||||||||| ||| ||||||||||||||| | ||||| |||||||| || ||||| |||| |||||||||| || |     
T  40487356 gacaagacgcgaaatcaaaacgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaatacaaaaagaaaaacttgaaag 40487257  T
Q  117 atgtgaaaaccac 129  Q
    | |||||||||||    
T  40487256 aagtgaaaaccac 40487244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 29239232 - 29239158
Alignment:
Q  155 aaaaaagatgtagcgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    ||||||||||||| |||||||| ||| || |||||||||||||||||| || |||||||| |||||||||||||||    
T  29239232 aaaaaagatgtagggggtgattctagatcaaaaaatgacctaaaacca-cctttctcgacaaatgaaagagaaaga 29239158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 47896182 - 47896071
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| ||| ||||||||||| |||||||||  || ||||||||||||||  | || || |||||||| || |||||||||| |  ||||||| ||||||    
T  47896182 gacaagacgtgaaatcaaacgccgcacaagacaacgaacaacacaacgccacactttgacgacgaaatcacaaaaaacacaaaagaaaaaacttgatata 47896083  T
Q  118 tgtgaaaaccac 129  Q
    ||||||||||||    
T  47896082 tgtgaaaaccac 47896071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 54149022 - 54148824
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcaca-agatgactaacaacacaacgccgtaattagatgacgaaataacaaaaaca---caataagaaaaactcgat 114  Q
    ||||| ||||||||||||| | |||||  ||| ||| |||||||||| |||| | ||||| |||||||| ||||||| |   ||| |  ||||||| |||    
T  54149022 gacaatacgcgaaatcaaatgccgcacttagacgacgaacaacacaatgccgcacttagacgacgaaatcacaaaaaaaatacaaaagaaaaaacttgat 54148923  T
Q  115 atatgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcga 212  Q
    | |||||||||||||       |||  || |||||||||||||||||||||||  |||||||| |||||| |||||||||||||||||| |||| |||||    
T  54148922 agatgtgaaaaccacttattt-agattgaaagaaaagaggaaaaaagatgtagaggggtgattgtaggtcaaaaaatgacctaaaaccacccctcctcga 54148824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 36910700 - 36910810
Alignment:
Q  20 acaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac--aaaaacacaataagaaaaactcgatata 117  Q
    |||| ||||||||||||||| ||||||||| ||| ||||||| ||||||| | ||||| | |||||| ||  |||||||||  | |||||||| |||| |    
T  36910700 acaagacgcgaaatcaaacgccgcacaagacgacgaacaacaaaacgccgcacttaga-ggcgaaatcacaaaaaaacacagaaggaaaaacttgataga 36910798  T
Q  118 tgtgaaaaccac 129  Q
    ||||||||||||    
T  36910799 tgtgaaaaccac 36910810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 44960010 - 44960121
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa-cacaataagaaaaactcgatata 117  Q
    |||||||||| |||||||||| ||||||||| ||| || || ||||| ||| | ||||| |||||||| ||||||| || || | ||||||||  ||| |    
T  44960010 gacaaaacgcaaaatcaaacgccgcacaagacgacgaataatacaacaccgcacttagacgacgaaatcacaaaaaacataaaaggaaaaacttaataga 44960109  T
Q  118 tgtgaaaaccac 129  Q
    ||||||||||||    
T  44960110 tgtgaaaaccac 44960121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 18011040 - 18010938
Alignment:
Q  29 gaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaac-tcgatatatgtgaaaac 126  Q
    ||||||||||| ||||||||||||  |||||||||||| |  | |||||| ||| ||| || |||||||||| | ||||||| | |||||||||||||||    
T  18011040 gaaatcaaacgccgcacaagatgatgaacaacacaacgtcacacttagataacggaatcacaaaaaacacaaaaggaaaaactttgatatatgtgaaaac 18010941  T
Q  127 cac 129  Q
    |||    
T  18010940 cac 18010938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 31271865 - 31271975
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| ||||||||||||| | ||||||||| ||| ||||||||||  ||| | ||||| || ||||| || |||||||||| |  ||||||| |||| |    
T  31271865 gacaagacgcgaaatcaaatgccgcacaagacgacgaacaacacaaaaccgcacttagacgaagaaatcacaaaaaacacaaaagaaaaaacttgataaa 31271964  T
Q  118 tgtgaaaacca 128  Q
    |||||||||||    
T  31271965 tgtgaaaacca 31271975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 32701520 - 32701426
Alignment:
Q  20 acaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgata 115  Q
    |||||||||||||||||||| ||||||||| |||  |||| ||||||||| | ||||| |||||||  || |||||||||| | |||||||| ||||    
T  32701520 acaaaacgcgaaatcaaacgccgcacaagacgac--acaatacaacgccgcacttagacgacgaaagcacaaaaaacacaaaaggaaaaacttgata 32701426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 50194493 - 50194550
Alignment:
Q  170 ggtgattttaggtcaaaaa-tgacctaaaaccatcccttctcgacgaatgaaagagaa 226  Q
    ||||||||||||||||||| ||| |||||||||  |||||||||||| ||||||||||    
T  50194493 ggtgattttaggtcaaaaaatgatctaaaaccactccttctcgacgagtgaaagagaa 50194550  T

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Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 20609091 - 20609167
Alignment:
Q  155 aaaaaagatgtagcgggt-gattttaggtcaaaaa-tgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    ||||||||||||| |||| |||||||||||||||| | || ||||| || |||| ||||||||||||| ||||||||    
T  20609091 aaaaaagatgtagagggttgattttaggtcaaaaaataacttaaaatcacccctcctcgacgaatgaaggagaaaga 20609167  T

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Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 29921931 - 29921871
Alignment:
Q  171 gtgattttaggtcaaaaa-tgacctaaaa-ccatcccttctcgacgaatgaaagagaaaga 229  Q
    |||||||||| ||||||| |||||||||| ||| |||| ||||||||||||||||||||||    
T  29921931 gtgattttagctcaaaaaatgacctaaaaaccacccctcctcgacgaatgaaagagaaaga 29921871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 29971084 - 29971024
Alignment:
Q  171 gtgattttaggtcaaaaa-tgacctaaaa-ccatcccttctcgacgaatgaaagagaaaga 229  Q
    |||||||||| ||||||| |||||||||| ||| |||| ||||||||||||||||||||||    
T  29971084 gtgattttagctcaaaaaatgacctaaaaaccacccctcctcgacgaatgaaagagaaaga 29971024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 19339206 - 19339095
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataaca-aaaacacaataagaaaaac-tcgatat 116  Q
    ||||| ||| ||||| ||||| |||||||| |||| |||||||||||| |  | ||||| ||| |||| ||| ||||||||| | ||||||| | |||||    
T  19339206 gacaagacgtgaaattaaacgccgcacaagttgacgaacaacacaacgtcacacttagacgacaaaatcacataaaacacaaaaggaaaaactttgatat 19339107  T
Q  117 atgtgaaaacca 128  Q
    ||||||||||||    
T  19339106 atgtgaaaacca 19339095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 20465028 - 20465135
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| |||| |||||||||| || |||||| ||| ||||||||||| ||  | ||||| || ||||| || |||||||||| | |||||||| ||||||    
T  20465028 gacaagacgcaaaatcaaacgccgtacaagacgacgaacaacacaacacctcacttagacgatgaaatcacaaaaaacacaaaaggaaaaacttgatata 20465127  T
Q  118 tgtgaaaa 125  Q
    ||| ||||    
T  20465128 tgttaaaa 20465135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 21533867 - 21533978
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataag-aaaaactcgatata 117  Q
    ||||| |||||||| |||||| || |||||| ||| ||||||||||||||| |  ||||  ||||||| ||||||| |  | ||| ||||||| |||| |    
T  21533867 gacaagacgcgaaaccaaacgccgtacaagacgacgaacaacacaacgccgcacatagacaacgaaatcacaaaaaaaatacaagaaaaaacttgataga 21533966  T
Q  118 tgtgaaaaccac 129  Q
    ||||||||||||    
T  21533967 tgtgaaaaccac 21533978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 51303825 - 51303908
Alignment:
Q  147 aaaagaggaaaaaagatgtagcgggtgattttaggtcaaaaa-tgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    ||||| |||||||||||| || |||||||| ||||||||||| |||| ||||| ||||||| ||||| || | |||||| ||||    
T  51303825 aaaaggggaaaaaagatgcagagggtgattctaggtcaaaaattgacataaaatcatccctcctcgatgagtaaaagaggaaga 51303908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 43016874 - 43016780
Alignment:
Q  30 aaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatatgtgaaa 124  Q
    |||||||||| | |||||||| || ||||||||||||||| | || || |||||||| ||||| | |||| | || |||||  ||||||||||||    
T  43016874 aaatcaaacgccacacaagataacgaacaacacaacgccgcacttggacgacgaaatcacaaacagacaaaaggataaacttaatatatgtgaaa 43016780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 46220581 - 46220519
Alignment:
Q  147 aaaagaggaaaaaagatgtagcgg-gtgattttaggtcaaaaatgacctaaaaccatcccttc 208  Q
    ||||||||||||||||||||  || || |||||| || |||||||||||||||||| ||||||    
T  46220581 aaaagaggaaaaaagatgtaaaggagtaattttatgttaaaaatgacctaaaaccaccccttc 46220519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 7449086 - 7449170
Alignment:
Q  145 agaaaagaggaaaaaagatgtagcggg-tgattttaggtc-aaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaa 227  Q
    ||||||||||||||||||||||| |||  |||| || ||| |||||||||||||||||| |||| ||  | ||| ||||||||||    
T  7449086 agaaaagaggaaaaaagatgtagagggacgattctatgtcaaaaaatgacctaaaaccagccctccttaatgaacgaaagagaaa 7449170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 7457228 - 7457312
Alignment:
Q  145 agaaaagaggaaaaaagatgtagcggg-tgattttaggtc-aaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaa 227  Q
    ||||||||||||||||||||||| |||  |||| || ||| |||||||||||||||||| |||| ||  | ||| ||||||||||    
T  7457228 agaaaagaggaaaaaagatgtagagggacgattctatgtcaaaaaatgacctaaaaccagccctccttaatgaacgaaagagaaa 7457312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 20465177 - 20465237
Alignment:
Q  169 gggtgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    |||||||| || |||||||||||| |||||||| |||| || || ||||||| ||||||||    
T  20465177 gggtgattctatgtcaaaaatgacataaaaccacccctacttgatgaatgaaggagaaaga 20465237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 42460623 - 42460567
Alignment:
Q  172 tgattttaggtcaaaaa-tgacctaaaaccatcccttctcgacgaatgaaagagaaa 227  Q
    ||||||||||||||||| |||||||||| ||||||| |||||  | |||||||||||    
T  42460623 tgattttaggtcaaaaactgacctaaaatcatccctcctcgataagtgaaagagaaa 42460567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 53508101 - 53508069
Alignment:
Q  169 gggtgattttaggtcaaaaatgacctaaaacca 201  Q
    |||||||||||||||||||||||||||| ||||    
T  53508101 gggtgattttaggtcaaaaatgacctaagacca 53508069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 33053226 - 33053438
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||||||| | ||||| |||||||| || |||||||||| | |||||||| |||| |    
T  33053226 gacaaaacgcgaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgataga 33053325  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtagcggg-tgattttaggtc-aaaaatgacctaaaaccatcccttctcgacga 215  Q
    ||||||||||||       |||  || ||||||| ||||||||||||||| ||| ||||| |||||| |||||||||||||||||| |||| ||||| ||    
T  33053326 tgtgaaaaccac-ttatttagattgaaagaaaaggggaaaaaagatgtagagggatgattctaggtcaaaaaatgacctaaaaccacccctcctcgatga 33053424  T
Q  216 atgaaagagaaaga 229  Q
    | ||| ||||||||    
T  33053425 acgaaggagaaaga 33053438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 606236 - 606024
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaa-aacacaataagaaaaactcgatata 117  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||||||||| | ||||| |||||||| ||||| ||||||| | |||||| | |||| |    
T  606236 gacaaaatgcgaaatcaaacgccgcacaagatgacgaacaacacaacgccgcacttagacgacgaaatcacaaataacacaaaaggaaaaatttgataga 606137  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacga 215  Q
    ||||||||||||       |||  || ||||||| |||||||||||||||  |||||||  |||||| ||||||||| ||||| || |||| ||||| ||    
T  606136 tgtgaaaaccac-ttatttagattgaaagaaaaggggaaaaaagatgtagaggggtgatcctaggtcaaaaaatgacataaaatcacccctcctcgatga 606038  T
Q  216 atgaaagagaaaga 229  Q
    | ||| ||||||||    
T  606037 acgaaggagaaaga 606024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 3913632 - 3913743
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| |||||||||||||||| |||||||| ||| ||||||||||||||| | ||||| ||||||||||| |||||||||| |  ||||||| |||| |    
T  3913632 gacaagacgcgaaatcaaacgttgcacaagacgacgaacaacacaacgccgcacttagacgacgaaataacaaaaaacacaaaagaaaaaacttgataga 3913731  T
Q  118 tgtgaaaaccac 129  Q
    ||||||||||||    
T  3913732 tgtgaaaaccac 3913743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 23128650 - 23128438
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||||||||||||||||||| | ||||||| ||| ||||||||||||||| | ||||| || ||||| || ||||| |||| | |||||||| |||| |    
T  23128650 gacaaaacgcgaaatcaaacgccacacaagacgacgaacaacacaacgccgcacttagacgatgaaatcacaaaaaatacaaaaggaaaaacttgataga 23128551  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacga 215  Q
    ||||||||||||       |||| || ||||||  || ||||||||||||  |||||||| |||||| |||||||||||||||| |||||| ||| | ||    
T  23128550 tgtgaaaaccac-ttatttagaatgaaagaaaatggggaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaactatccctcctcaatga 23128452  T
Q  216 atgaaagagaaaga 229  Q
    | ||| ||||||||    
T  23128451 acgaaggagaaaga 23128438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 127698 - 127591
Alignment:
Q  23 aaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgtg 121  Q
    ||||||||||||||| ||| ||||||| ||| ||||||||||||| | | ||||| |||||||| || |||||||||| | |||||||| ||||||||||    
T  127698 aaacgcgaaatcaaatgtcacacaagacgacgaacaacacaacgctgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatatatgtg 127599  T
Q  122 aaaaccac 129  Q
    ||||||||    
T  127598 aaaaccac 127591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 7515260 - 7515370
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaa-aaactcgatata 117  Q
    ||||| ||||||||||||||||||| ||||| ||| ||||||| ||||||| | ||||| |||||||| |||||||||||| ||||| ||||| |||| |    
T  7515260 gacaagacgcgaaatcaaacgtcgcccaagacgacgaacaacaaaacgccgcacttagacgacgaaatcacaaaaacacaa-aagaagaaacttgataga 7515358  T
Q  118 tgtgaaaaccac 129  Q
    ||||||||||||    
T  7515359 tgtgaaaaccac 7515370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 68059 - 68270
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||||||||||||||||||| ||||||||| |   || |||||||| ||  | ||||| |||||||| || |||||||||| | |||||||| |||| |    
T  68059 gacaaaacgcgaaatcaaacgccgcacaagacggtgaataacacaacaccacacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgataga 68158  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgt--agcgggtgattttaggtcaaaaatgacctaaaaccatcccttctcgacga 215  Q
    ||||||||||||       |||   | ||||||| || ||||||||||  || |||||||| |||||||||||| |||||||||||||||| ||||| ||    
T  68159 tgtgaaaaccac-ttatttagattaaaagaaaag-gggaaaaagatgtagagggggtgattctaggtcaaaaattacctaaaaccatccctcctcgatga 68256  T
Q  216 atgaaagagaaaga 229  Q
    | ||| ||||||||    
T  68257 acgaaggagaaaga 68270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 32327275 - 32327386
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| ||||||||||||||| ||||||||| ||| ||||||||||||||| | |||||  | ||||| || |||||||||| | |||||||| |||| |    
T  32327275 gacaagacgcgaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagactatgaaatcacaaaaaacacaaaaggaaaaacttgataga 32327374  T
Q  118 tgtgaaaaccac 129  Q
    ||||||||||||    
T  32327375 tgtgaaaaccac 32327386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 34018582 - 34018481
Alignment:
Q  29 gaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgtgaaaacc 127  Q
    ||||||||||||| ||||||| ||| ||||||||||||||  | ||||| |||||||| || |||||||||| |  ||||||| ||||||||||||||||    
T  34018582 gaaatcaaacgtctcacaagacgacgaacaacacaacgccacacttagacgacgaaatcacaaaaaacacaaaagaaaaaacttgatatatgtgaaaacc 34018483  T
Q  128 ac 129  Q
    ||    
T  34018482 ac 34018481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 229
Target Start/End: Complemental strand, 12170483 - 12170315
Alignment:
Q  63 aacgccgtaattagatgacgaaataacaaaaa-cacaataagaaaaactcgatatatgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaag 161  Q
    ||||||| | ||||| |||||||| ||||||| ||||| | |||||||| |||| |||||||||||||       |||  || ||||||| |||||||||    
T  12170483 aacgccgcacttagacgacgaaatcacaaaaaacacaaaacgaaaaacttgatagatgtgaaaaccacttattt-agattgaaagaaaaggggaaaaaag 12170385  T
Q  162 atgtagcggg-tgattttaggtcaaaaa-tgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    |||||| ||| ||||| ||||||||||| ||||||||||||| |||| ||||| ||| ||| ||||||||    
T  12170384 atgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctcctcgatgaacgaaggagaaaga 12170315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 30608576 - 30608757
Alignment:
Q  23 aaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaa-ttagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgt 120  Q
    |||||| |||||||||| ||||||||| ||| |||||||||||| ||||| ||||| |||||||| || ||||| |||| ||  |||||| |||||||||    
T  30608576 aaacgcaaaatcaaacgccgcacaagacgacgaacaacacaacgacgtaacttagacgacgaaatcacaaaaaatacaa-aatgaaaacttgatatatgt 30608674  T
Q  121 gaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtcaaaaatgacctaaaaccatcc 204  Q
    |||||||||       |||  || ||||||| |  ||||| ||||||  |||||||| |||||||||||||||||||||||||||    
T  30608675 gaaaaccac-taatttagattgaaagaaaag-gagaaaaatatgtagaggggtgattctaggtcaaaaatgacctaaaaccatcc 30608757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 29319936 - 29320011
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa 94  Q
    ||||| ||||||||||||||| |||| |||| ||| ||||||||||||||| | ||||| ||| |||| |||||||    
T  29319936 gacaagacgcgaaatcaaacgccgcataagaggacgaacaacacaacgccgcacttagacgacaaaatcacaaaaa 29320011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 28981050 - 28981001
Alignment:
Q  178 taggtcaaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaa 227  Q
    |||||||||||||||||||||||| ||||  ||||||| |||||||||||    
T  28981050 taggtcaaaaatgacctaaaaccaaccctattcgacgagtgaaagagaaa 28981001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 545927 - 545845
Alignment:
Q  148 aaagaggaaaaaagatgtagcgg-gtgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    |||| |||||||||||||||  | |||||| ||||||||||||| ||||||| || |||| ||||| || |||||||| ||||    
T  545927 aaaggggaaaaaagatgtagaagagtgattctaggtcaaaaatggcctaaaatcacccctcctcgatgagtgaaagaggaaga 545845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 3355148 - 3355082
Alignment:
Q  20 acaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaat 86  Q
    |||| ||||||||||||||||| ||||||| ||| ||||||||||| ||| | ||||| || |||||    
T  3355148 acaagacgcgaaatcaaacgtcacacaagaggacgaacaacacaacaccgcacttagacgatgaaat 3355082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 7976376 - 7976434
Alignment:
Q  171 gtgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    |||||| |||||||||||||||||||||||| || | ||||| || ||||| |||||||    
T  7976376 gtgattctaggtcaaaaatgacctaaaaccacccatgctcgatgagtgaaaaagaaaga 7976434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 29320046 - 29320132
Alignment:
Q  145 agaaaagaggaaaaaagatgtag-cgggtgattttaggtcaaaa-atgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    ||||||| |||||||||||||||  |||||||| ||| |||||| |||||||||||||| || | ||||| ||| ||| ||||||||    
T  29320046 agaaaaggggaaaaaagatgtagaggggtgattctagatcaaaatatgacctaaaaccacccatcctcgatgaacgaaggagaaaga 29320132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 20220904 - 20220860
Alignment:
Q  25 acgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccg 69  Q
    ||||||||||||||| ||||||||| ||| ||||||| |||||||    
T  20220904 acgcgaaatcaaacgccgcacaagacgacgaacaacaaaacgccg 20220860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 22114888 - 22114844
Alignment:
Q  25 acgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccg 69  Q
    ||||||||||||||| ||||||||| ||| ||||||| |||||||    
T  22114888 acgcgaaatcaaacgccgcacaagacgacgaacaacaaaacgccg 22114844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 30776680 - 30776594
Alignment:
Q  36 aacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac--aaaaacacaataagaaaaactcgatatatgtg 121  Q
    |||| ||||||||||||| |||||||||||| || | | ||| |||||||| ||  |||||||||| |||||||||| ||| ||||||    
T  30776680 aacgccgcacaagatgacgaacaacacaacgtcgcactaagacgacgaaatcacgaaaaaacacaa-aagaaaaacttgatgtatgtg 30776594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 32059934 - 32059894
Alignment:
Q  26 cgcgaaatcaaacgtcgcacaagatgactaacaacacaacg 66  Q
    |||||||||||||| ||||||||| ||| ||||||||||||    
T  32059934 cgcgaaatcaaacgccgcacaagacgacgaacaacacaacg 32059894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 26825460 - 26825247
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||||||| | ||||| |||||||| |||||||||||| | |||||||| |||| |     
T  26825460 gacaaaacgcgaaatcaaacgccgcacaagaagacgaacaacacaacgccgcacttagaagacgaaatcacaaaaacacaaaaggaaaaacttgatagac 26825361  T
Q  119 gtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtagcg-ggtgattttaggtc---aaaaatgacctaaaaccatcccttctcgacg 214  Q
    |||||||||||       |||  || ||||||| ||||||||||||||| | ||||||| ||||||   ||||| |||||||||||| |||| ||||| |    
T  26825360 gtgaaaaccac-ttatttagattgaaagaaaaggggaaaaaagatgtagagtggtgattctaggtccaaaaaaaagacctaaaaccacccctcctcgatg 26825262  T
Q  215 aatgaaagagaaaga 229  Q
    || ||| ||||||||    
T  26825261 aaagaaggagaaaga 26825247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 9113783 - 9113995
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||||||| ||||||||||| ||||||||| ||| ||||||| ||||||| | ||||| |||||||| || |||||||||| | |||||||| |||| |    
T  9113783 gacaaaacgtgaaatcaaacgccgcacaagacgacgaacaacagaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgataga 9113882  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttagg-tcaaaaatgacctaaaaccatcccttctcgacga 215  Q
    ||||||||||||       |||   | ||||||  |||||||||||||||  |||||||| |||| | ||||||||||||||| || |||| ||||| ||    
T  9113883 tgtgaaaaccac-ttatttagattaaaagaaaatgggaaaaaagatgtagaggggtgattctaggttaaaaaatgacctaaaatcacccctcctcgatga 9113981  T
Q  216 atgaaagagaaaga 229  Q
    | ||||||||||||    
T  9113982 acgaaagagaaaga 9113995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 13007259 - 13007047
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    |||||||| | |||||||||| ||||||||| ||| ||||||||||||||| | ||||| |||||||| || |||||||||| | |||||||| |||| |    
T  13007259 gacaaaacacaaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgataga 13007160  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacga 215  Q
    ||||||||||||       |||  || ||||||  ||||||||| |||||  |||||||| |||||| |||||||||||||||||| | || ||||| ||    
T  13007159 tgtgaaaaccac-ttatttagattgaaagaaaatgggaaaaaaggtgtagaggggtgattctaggtcaaaaaatgacctaaaaccacctctcctcgatga 13007061  T
Q  216 atgaaagagaaaga 229  Q
    | ||| ||||||||    
T  13007060 acgaaggagaaaga 13007047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 11867698 - 11867529
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| ||||||||||||||| || |||||| ||||||||||||||| | | ||||||| |||||||| |||||||||||| | |||||| | |||||||    
T  11867698 gacaagacgcgaaatcaaacgccgtacaagacgactaacaacacaacactgcaattagacgacgaaatcacaaaaacacaaaaggaaaaatttgatatat 11867599  T
Q  119 gtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtagcg-ggtgattttaggtcaaaaatgacctaaaac 199  Q
     ||||| |            |  || |||||||| |||||||||||||| | ||||||||||||||||||||||||||||||    
T  11867598 ttgaaacc------------attgaaagaaaagatgaaaaaagatgtagagtggtgattttaggtcaaaaatgacctaaaac 11867529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 38597827 - 38597616
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa-cacaataagaaaaactcgatata 117  Q
    ||||| ||||||||||||||| ||||||||| ||| ||||||||||||||| | ||||| |||||||| ||||||| ||||| | |||||||| |||| |    
T  38597827 gacaagacgcgaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaagcacaaaaggaaaaacttgataga 38597728  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacga 215  Q
    |||||||| |||       | |  || |||| || |||||||||||||||  |||||||| |||||| |||||| ||||||||||| |||| ||||| ||    
T  38597727 tgtgaaaatcacttatttaa-attgaaagaatag-ggaaaaaagatgtagaggggtgattctaggtcaaaaaataacctaaaaccacccctcctcgatga 38597630  T
Q  216 atgaaagagaaaga 229  Q
    | ||| ||||||||    
T  38597629 acgaaggagaaaga 38597616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 14726517 - 14726631
Alignment:
Q  17 gtgacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacaca-ataag-aaaaactcgat 114  Q
    ||||||| |||||||||||||| |||||||||| ||| ||||||||||| ||| | ||||| |||||||| ||||||| ||| ||||| ||||||| |||    
T  14726517 gtgacaagacgcgaaatcaaacatcgcacaagacgacgaacaacacaacaccgcacttagacgacgaaatcacaaaaaaacacataagaaaaaacttgat 14726616  T
Q  115 atatgtgaaaaccac 129  Q
    |||| ||||||||||    
T  14726617 atatatgaaaaccac 14726631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 6012196 - 6012408
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||| ||| | ||||| || ||||| || |||||||||| | |||||||| |||| |    
T  6012196 gacaaaacgcgaaatcaaacgccgcacaagacgacgaacaacacaacaccgcacttagacgatgaaatcacaaaaaacacaaaaggaaaaacttgataga 6012295  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacga 215  Q
     ||||||| |||       |||  || ||||||| | |||||||||||||  |||||||| || ||| |||||||||||||||||| |||| ||| | ||    
T  6012296 cgtgaaaaacac-ttatttagattgaaagaaaagggaaaaaaagatgtagaggggtgattctatgtcaaaaaatgacctaaaaccacccctcctcaatga 6012394  T
Q  216 atgaaagagaaaga 229  Q
    | ||| ||||||||    
T  6012395 acgaaggagaaaga 6012408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 6216918 - 6216818
Alignment:
Q  30 aaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa-cacaataagaaaaactcgatatatgtgaaaacca 128  Q
    |||||||| | ||||||||| ||| ||||||| ||||||| | ||||| |||||||| ||||||| ||||| | |||||||| |||||||||||||||||    
T  6216918 aaatcaaatgccgcacaagacgacgaacaacataacgccgcatttagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatatatgtgaaaacca 6216819  T
Q  129 c 129  Q
    |    
T  6216818 c 6216818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 24229842 - 24229950
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacaca-ataagaaa-aactcgatat 116  Q
    ||||| ||||||||||||||||| ||||||| ||| ||||||| ||||||| | |||||||||||||| ||||||| ||| | |||||| |||| ||||     
T  24229842 gacaagacgcgaaatcaaacgtcacacaagacgacgaacaacaaaacgccgcacttagatgacgaaatcacaaaaaaacacaaaagaaacaacttgatag 24229941  T
Q  117 atgtgaaaa 125  Q
    |||||||||    
T  24229942 atgtgaaaa 24229950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 35850826 - 35850754
Alignment:
Q  22 aaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa 94  Q
    |||||||||||||||||| ||||||||| ||| |||||||||||| |||| ||||| |||||||| |||||||    
T  35850826 aaaacgcgaaatcaaacgccgcacaagacgacgaacaacacaacgtcgtacttagacgacgaaatcacaaaaa 35850754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 11976993 - 11977106
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaat---aacaaaaacacaataagaaaaactcgata 115  Q
    ||||| |||||||||||||||||| |||||| ||| ||||| ||||||||  | ||||| ||||||||   || |||||||||| |  ||||||| ||||    
T  11976993 gacaagacgcgaaatcaaacgtcgtacaagacgacgaacaatacaacgccacacttagacgacgaaatcacaaaaaaaacacaaaagaaaaaacttgata 11977092  T
Q  116 tatgtgaaaaccac 129  Q
    ||||||||||||||    
T  11977093 tatgtgaaaaccac 11977106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 229
Target Start/End: Complemental strand, 34945391 - 34945240
Alignment:
Q  79 gacgaaataacaaaaacacaataagaaaaactcgatatatgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtagc-gggtgattt 177  Q
    |||||||| |||||||||||| | |||||||| |||| |||||||||||||       |||  || ||||||| |||||||||||||||  ||||||||     
T  34945391 gacgaaatcacaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttattt-agattgaaagaaaaggggaaaaaagatgtagaagggtgattc 34945293  T
Q  178 taggtcaaaaa-tgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    ||||||||||| |||||||||||||||| |  |||| ||| ||| ||||||||    
T  34945292 taggtcaaaaaatgacctaaaaccatccttcttcgatgaacgaaggagaaaga 34945240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 25980188 - 25980077
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaac-acaataagaaaaactcgatata 117  Q
    ||||| ||||||||| ||||| ||||||||| ||| ||||||||||  ||| | ||||| |||||||  |||||||| |||| | ||||||||||||| |    
T  25980188 gacaagacgcgaaattaaacgccgcacaagacgacgaacaacacaataccgcacttagacgacgaaaccacaaaaaccacaaaaggaaaaactcgataga 25980089  T
Q  118 tgtgaaaaccac 129  Q
    ||| ||||||||    
T  25980088 tgttaaaaccac 25980077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 7036250 - 7036046
Alignment:
Q  18 tgacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatata 117  Q
    |||||| ||||||||||||||| ||||||||| ||| |  ||||| |||||| ||| ||| ||||||||        ||||| |  ||||| | ||||||    
T  7036250 tgacaagacgcgaaatcaaacgccgcacaagacgaccactaacaccacgccgcaatcagacgacgaaat--------cacaaaagaaaaaaattgatata 7036159  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacga 215  Q
    ||||||||||||       |||  || |||||||||||||||||||||||  | ||||||||||||| |||||||||||||||||| |||  || || ||    
T  7036158 tgtgaaaaccac-ttatttagattgaaagaaaagaggaaaaaagatgtagatgagtgattttaggtcaaaaaatgacctaaaaccaccccaccttgatga 7036060  T
Q  216 atgaaagagaaaga 229  Q
    ||||| ||||||||    
T  7036059 atgaaggagaaaga 7036046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 15571506 - 15571405
Alignment:
Q  29 gaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa-cacaataagaaaaactcgatatatgtgaaaacc 127  Q
    ||||||||||||  ||||||||| | || |||||||||||  | ||||| |||||||| |||||||  |||| | |||||||| ||||||||||||||||    
T  15571506 gaaatcaaacgtaacacaagatggcaaaaaacacaacgccacacttagacgacgaaatcacaaaaattacaaaaggaaaaacttgatatatgtgaaaacc 15571407  T
Q  128 ac 129  Q
    ||    
T  15571406 ac 15571405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 8096555 - 8096738
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataaca--aaaacacaataagaaaaactcgatat 116  Q
    ||||| ||||||||||||| | ||| ||| |  || ||||||||||||||| | ||||| || ||||| |||  ||||||||| |  ||||||| |||||    
T  8096555 gacaagacgcgaaatcaaatgccgctcaaaacaacgaacaacacaacgccgcacttagacgatgaaatcacacaaaaacacaaaagaaaaaacttgatat 8096654  T
Q  117 atgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtcaaaaatgacctaaaacca 201  Q
    |||||||||||||       |||  || ||||||| ||||||||||  |||  |||||||| ||||||||||||||||||||||||    
T  8096655 atgtgaaaaccac-ttatttagattgaaagaaaag-ggaaaaaagaaatagaggggtgattctaggtcaaaaatgacctaaaacca 8096738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 41630534 - 41630352
Alignment:
Q  17 gtgacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaac-acaataagaaaaactcgata 115  Q
    ||||||| ||||||| |||||||||| |||||||||| ||||||| ||| ||| | |||||   |||||| |||||||| |||| ||||||||||  |||    
T  41630534 gtgacaagacgcgaagtcaaacgtcgtacaagatgacaaacaacaaaacaccgcacttagacatcgaaatcacaaaaactacaaaaagaaaaactttata 41630435  T
Q  116 tatgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtagcgggtgattttaggtcaaaaatgacctaaaacca 201  Q
     ||||||||||  |       |||  || ||||| | |  |||||||||||| | |||||| ||||||||||||||||||||||||    
T  41630434 gatgtgaaaacggcttattt-agattgaaagaaatggg--aaaaagatgtagagagtgattctaggtcaaaaatgacctaaaacca 41630352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 11073958 - 11074069
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| ||||||||||||||| ||||||||| ||| ||||| ||||||| | | |||||  ||||||| || ||||| |||| | |||||||| |||| |    
T  11073958 gacaagacgcgaaatcaaacgccgcacaagacgacgaacaaaacaacgctgcacttagacaacgaaatcacaaaaaatacaaaaggaaaaacttgataga 11074057  T
Q  118 tgtgaaaaccac 129  Q
    ||||||| ||||    
T  11074058 tgtgaaagccac 11074069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 38007388 - 38007275
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataa---gaaaaactcgata 115  Q
    |||||||| |||||||||||| ||||||||| ||  |||| ||||| | |||| ||||| |||||||| ||||||| |||| ||    ||||||| ||||    
T  38007388 gacaaaacacgaaatcaaacgccgcacaagacgatgaacagcacaatgtcgtacttagacgacgaaatcacaaaaaaacaaaaaaacaaaaaacttgata 38007289  T
Q  116 tatgtgaaaaccac 129  Q
    | ||||||||||||    
T  38007288 tgtgtgaaaaccac 38007275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 14082440 - 14082539
Alignment:
Q  28 cgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatatgtgaaaacc 127  Q
    |||||||||||| || |||||| ||| ||||||||||||||  | ||||| || ||||| ||||||  |  |||||||||||| ||||||||||||| ||    
T  14082440 cgaaatcaaacgccgtacaagacgacgaacaacacaacgccacacttagacgatgaaatcacaaaa--aatataagaaaaacttgatatatgtgaaagcc 14082537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 26878263 - 26878348
Alignment:
Q  145 agaaaagaggaaaaaagatgtagcg-ggtgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    ||||||| || |||||||||||| | ||||||| ||| ||||||||||| |||||||| | || ||||| ||||||| ||||||||    
T  26878263 agaaaagggggaaaaagatgtagagaggtgattctagatcaaaaatgacataaaaccacctctcctcgatgaatgaaggagaaaga 26878348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 2979499 - 2979582
Alignment:
Q  148 aaagaggaaaaaagatgtag-cgggtgattttaggtcaaaaa-tgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    ||||||||||||||||| ||  |||||||| ||||||||||| |||||||||| || |||| ||||| || |||||||| ||||    
T  2979499 aaagaggaaaaaagatgcagaggggtgattataggtcaaaaattgacctaaaatcacccctcctcgatgagtgaaagaggaaga 2979582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 7930199 - 7930157
Alignment:
Q  27 gcgaaatcaaacgtcgcacaagatgactaacaacacaacgccg 69  Q
    ||||||||||||| ||||||||| ||| |||||||||||||||    
T  7930199 gcgaaatcaaacgacgcacaagacgacgaacaacacaacgccg 7930157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 14664267 - 14664219
Alignment:
Q  153 ggaaaaaagatgtagcgggtgattttaggtcaaaaatgacctaaaacca 201  Q
    |||||||||||| ||  ||||||| ||| ||||||||||||||||||||    
T  14664267 ggaaaaaagatgcagatggtgattctagatcaaaaatgacctaaaacca 14664219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 35850688 - 35850620
Alignment:
Q  145 agaaaagaggaaaaaagatgtagc-gggtgattttaggtcaaaaatgacctaaaaccatcccttctcga 212  Q
    ||||||| | |||||| ||||||  |||||||| ||||||||||| |||||||||||| |||| |||||    
T  35850688 agaaaagggaaaaaaatatgtagatgggtgattctaggtcaaaaaagacctaaaaccacccctcctcga 35850620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 9169319 - 9169527
Alignment:
Q  21 caaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatatgt 120  Q
    ||||||| ||||||||||| |||||||||  || ||||||||||||||| | ||||| |||||||| |||||||||||| | |||||||| |||| ||||    
T  9169319 caaaacgtgaaatcaaacgacgcacaagacaacgaacaacacaacgccgcacttagacgacgaaatcacaaaaacacaaaaggaaaaacttgatagatgt 9169418  T
Q  121 gaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaatga 219  Q
    |||||||||       |||  || ||||||| | |||||| ||||||  |||||||| |||||||||||||||||||||||| |||| |||||  || ||    
T  9169419 gaaaaccac-ttatttagattgaaagaaaagggaaaaaaaaatgtagaggggtgattctaggtcaaaaatgacctaaaaccacccctcctcgataaacga 9169517  T
Q  220 aagagaaaga 229  Q
    | ||||||||    
T  9169518 atgagaaaga 9169527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 8809321 - 8809111
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| ||||||||||||  | ||||||||| |||||||||||| ||| || ||||||| |||||||| |||||||||||| | ||||||||  ||||||    
T  8809321 gacaagacgcgaaatcaattgccgcacaagacgactaacaacacgacgtcgcaattagacgacgaaattacaaaaacacaaaaggaaaaacttaatatat 8809222  T
Q  119 gtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaat 217  Q
    ||| || ||||        ||  || |||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||| |  | ||||||| ||    
T  8809221 gtgcaagccacttatttt-gattgaaagaaaagaggaaaaaagatgtagaggggtgattttaggtcaaaaatgatctaaaaccacctgtcctcgacgtat 8809123  T
Q  218 gaaagagaaaga 229  Q
    ||| ||||||||    
T  8809122 gaaggagaaaga 8809111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 7646514 - 7646301
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataaca-aaaacacaataagaaaaactcgatata 117  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||| ||||||| | ||||| |||||||| ||| ||||||||| | |||||||| | || |    
T  7646514 gacaaaacgcgaaatcaaacgccgcacaagacgacgaacaacataacgccgcacttagacgacgaaatcacagaaaacacaaaaggaaaaacttggtaga 7646415  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagagg-aaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacg 214  Q
    ||||||||||||       ||| ||| ||||||| || |||||||||||||  |||||||| |||||| |||||||||||||||||| |||| ||||| |    
T  7646414 tgtgaaaaccac-ttatttagatcgaaagaaaaggggaaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctcctcgatg 7646316  T
Q  215 aatgaaagagaaaga 229  Q
    || ||| ||||||||    
T  7646315 aacgaaggagaaaga 7646301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 4099144 - 4098932
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    |||||||||| |||||||||| |||||||||  || ||||||||||||||| | ||||| |||||||| || |||||||||| | |||||||| |||| |    
T  4099144 gacaaaacgcaaaatcaaacgccgcacaagacaacgaacaacacaacgccgcacttagacgacgaaattacaaaaaacacaaaaggaaaaacttgataga 4099045  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacga 215  Q
    ||||||||||||       |||  || ||||||| |||||||||||||||  |||||||| |||||| |||||||||||||| ||| || | ||||| ||    
T  4099044 tgtgaaaaccac-ttatttagattgaaagaaaaggggaaaaaagatgtagatgggtgattctaggtcaaaaaatgacctaaagccacccttcctcgatga 4098946  T
Q  216 atgaaagagaaaga 229  Q
    | ||||||||||||    
T  4098945 aggaaagagaaaga 4098932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 31128851 - 31128949
Alignment:
Q  31 aatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatatgtgaaaaccac 129  Q
    ||||||||| | ||||||| ||||||||||||||||||| ||||| |||||||||| |||||||||||| | |||||||| ||||||||||||||||||    
T  31128851 aatcaaacgccacacaagacgactaacaacacaacgccgcaattaaatgacgaaatcacaaaaacacaaaaggaaaaacttgatatatgtgaaaaccac 31128949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 29279629 - 29279740
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| || |||||||||| ||||| ||||| ||||| ||||||||||||| ||||||| |||||||| || |||||||||| | |||||||| ||||||    
T  29279629 gacaagacacgaaatcaaatgtcgcccaagacgactaccaacacaacgccgcaattagacgacgaaatcacaaaaaacacaaaaggaaaaacttgatata 29279728  T
Q  118 tgtgaaaaccac 129  Q
    ||||||||||||    
T  29279729 tgtgaaaaccac 29279740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 36943180 - 36943394
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacaca---ataagaaaaactcgata 115  Q
    ||||| ||||||||||||||| ||||||||| ||| ||||||||||||||| | ||||| |||||||| ||||||| | |   | || ||||||| ||||    
T  36943180 gacaatacgcgaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaaaaaaacaaaaaaaaaacttgata 36943279  T
Q  116 tatgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtagcg-ggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgac 213  Q
     |||||||||| ||       |||  || ||||||||||||||||||||||| | ||||||| |||||| |||||||||||||||||| |||| |||||     
T  36943280 gatgtgaaaactac-ttatttagattgaaagaaaagaggaaaaaagatgtagagtggtgattctaggtcaaaaaatgacctaaaaccacccctcctcgat 36943378  T
Q  214 gaatgaaagagaaaga 229  Q
     || ||| ||||||||    
T  36943379 caacgaaggagaaaga 36943394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 7448288 - 7448178
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||||||| | |||||  ||||||| || |||||||||| | |||||||| |||| |    
T  7448288 gacaaaacgcgaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagacaacgaaatcacaaaaaacacaaaaggaaaaacttgataga 7448189  T
Q  118 tgtgaaaacca 128  Q
    |||||||||||    
T  7448188 tgtgaaaacca 7448178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 38445204 - 38445024
Alignment:
Q  22 aaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgt 120  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||| | | ||||| |||||||| || |||||||||| |  ||||||| |||| ||||    
T  38445204 aaaacgcgaaatcaaacgccgcacaagacgacgaacaacacaacgctgcacttagacgacgaaatcacaaaaaacacaaaagaaaaaacttgatagatgt 38445105  T
Q  121 gaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtcaaaaatgacctaaaacca 201  Q
    |||||||||       | |  || ||||||  |||||||||||||||  |||||||| ||| ||||||||||||||||||||    
T  38445104 gaaaaccac-ttatttatattgaaagaaaaagggaaaaaagatgtagaggggtgattctagatcaaaaatgacctaaaacca 38445024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 4778791 - 4778582
Alignment:
Q  22 aaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaat-aacaaaaacacaataagaaaaactcgatatatgt 120  Q
    ||||||||||||||||||  |||||||| ||| || |||||||||||| | ||| | |||||||| || ||||||||||   |||||||| |||| ||||    
T  4778791 aaaacgcgaaatcaaacgctgcacaagacgacgaataacacaacgccgcacttaaacgacgaaatcaaaaaaaacacaaagggaaaaacttgatagatgt 4778692  T
Q  121 gaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacgaatg 218  Q
    |||||||||       | |  || ||||||| | |||||||||||||  |||||||| |||||| |||||||||||||||||| |||| ||||| ||| |    
T  4778691 gaaaaccacttatttaa-attgaaagaaaagggaaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctcctcgatgaacg 4778593  T
Q  219 aaagagaaaga 229  Q
    || ||||||||    
T  4778592 aaggagaaaga 4778582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 43397178 - 43397372
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac--aaaaacacaataagaaaaactcgatat 116  Q
    ||||| ||||||||||||||| | ||||||| ||| ||||||||||||||  | ||||| |||||||| ||  |||||||||| |  ||||||| |||||    
T  43397178 gacaagacgcgaaatcaaacgccacacaagacgacgaacaacacaacgccacacttagacgacgaaatcacgaaaaaacacaaaagaaaaaacttgatat 43397277  T
Q  117 atgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtagcg-ggtgattttaggtc-aaaaatgacctaaaaccatcccttctcga 212  Q
    |||||||||||||       |||  || |||||  ||| |||||||||||| | ||||||| |||||| |||||||||||||||||| ||||||||||    
T  43397278 atgtgaaaaccac-ttatttagattgaaagaaa--agggaaaaagatgtagagaggtgattctaggtcaaaaaatgacctaaaaccaccccttctcga 43397372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 27097465 - 27097675
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa-cacaataagaaaaactcgatata 117  Q
    ||||||| | ||||||||| | ||||||||| ||| ||||||||||||||| | ||||| |||||||| | ||||| ||||| | |||||||| ||||      
T  27097465 gacaaaaggtgaaatcaaatgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcagaaaaaacacaaaaggaaaaacttgatagt 27097564  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtagcgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacgaa 216  Q
    ||||||| | ||       ||| | | ||||||| ||||||||||||||| |||||||| |||||| ||||||||||||||| || |||| ||||| |||    
T  27097565 tgtgaaatc-acttattt-agatcaaaagaaaaggggaaaaaagatgtagagggtgattctaggtcaaaaaatgacctaaaatcacccctcctcgatgaa 27097662  T
Q  217 tgaaagagaaaga 229  Q
     ||| ||||||||    
T  27097663 cgaaggagaaaga 27097675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 4904215 - 4904315
Alignment:
Q  30 aaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgtgaaaacca 128  Q
    |||||||||||||||||||| ||| ||||||||||||||  | || || |||||||| || |||||||||| |  ||||||| |||||||||||||||||    
T  4904215 aaatcaaacgtcgcacaagacgacgaacaacacaacgccacactttgacgacgaaatcacaaaaaacacaaaagaaaaaacttgatatatgtgaaaacca 4904314  T
Q  129 c 129  Q
    |    
T  4904315 c 4904315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 1415598 - 1415523
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa 94  Q
    ||||||||||||||||||||| ||||||||| ||  |||||||||||| |||| ||||| |||||||| |||||||    
T  1415598 gacaaaacgcgaaatcaaacgccgcacaagacgaagaacaacacaacgtcgtacttagacgacgaaatcacaaaaa 1415523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 11985289 - 11985400
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaa-acacaataagaaaaactcgatata 117  Q
    ||||| |||| |||||||||| |||||||||  || |||||||||| |||| | ||||| |||||||| |||||| |||||| |  ||||||| ||||||    
T  11985289 gacaagacgcaaaatcaaacgccgcacaagacaacaaacaacacaaagccgcacttagacgacgaaatcacaaaacacacaaaagaaaaaacttgatata 11985388  T
Q  118 tgtgaaaaccac 129  Q
    ||||||||||||    
T  11985389 tgtgaaaaccac 11985400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 5427927 - 5428033
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| ||||||||||||||| | ||||||| ||| ||||||| ||||||| | || || |||||||| |||||||||||| |  ||||||| |||| ||    
T  5427927 gacaagacgcgaaatcaaacgccacacaagacgacgaacaacaaaacgccgcacttggacgacgaaatcacaaaaacacaaaagaaaaaacttgatagat 5428026  T
Q  119 gtgaaaa 125  Q
    |||||||    
T  5428027 gtgaaaa 5428033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 7677938 - 7678041
Alignment:
Q  25 acgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgtgaa 123  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||| | ||||| |||||||| || |||||| ||| | ||||||||  ||| |||||||    
T  7677938 acgcgaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaactcaaaaggaaaaact--atagatgtgaa 7678035  T
Q  124 aaccac 129  Q
    ||||||    
T  7678036 aaccac 7678041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 31210672 - 31210777
Alignment:
Q  25 acgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaat-aacaaaaacacaataagaaaaactcgatatatgtgaa 123  Q
    ||||||||||||||| |||||||||  || ||||||||||||||| | ||||| |||||||| |  |||||||||| |  ||||||| |||| |||||||    
T  31210672 acgcgaaatcaaacgccgcacaagacaacaaacaacacaacgccgcacttagacgacgaaatcataaaaaacacaaaagaaaaaacttgatagatgtgaa 31210771  T
Q  124 aaccac 129  Q
    ||||||    
T  31210772 aaccac 31210777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 35220368 - 35220256
Alignment:
Q  17 gtgacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgata 115  Q
    |||||||||||| |||||||||| ||||||||| ||  ||||||| || |||| | ||||| |||||||| || |||||||||| || ||||||| |||     
T  35220368 gtgacaaaacgcaaaatcaaacgccgcacaagacgatgaacaacataatgccgcacttagacgacgaaatcacaaaaaacacaagaa-aaaaacttgatt 35220270  T
Q  116 tatgtgaaaaccac 129  Q
    ||||||||||||||    
T  35220269 tatgtgaaaaccac 35220256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 4041664 - 4041764
Alignment:
Q  30 aaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgtgaaaacca 128  Q
    |||||||||| || |||||| ||| |||||||||||| || | ||||| |||||||| || |||||||||| | |||||||| |||| ||||||||||||    
T  4041664 aaatcaaacgccgtacaagacgacgaacaacacaacgacgcacttagaagacgaaatcacaaaaaacacaaaaggaaaaacttgatagatgtgaaaacca 4041763  T
Q  129 c 129  Q
    |    
T  4041764 c 4041764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 201
Target Start/End: Original strand, 17994789 - 17994958
Alignment:
Q  28 cgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatatgtgaaaacc 127  Q
    |||||||||||| |||||||||   ||||||| ||||||||  ||||||| |||||||| ||||||||||||||   |||||| ||| | ||||||||||    
T  17994789 cgaaatcaaacgccgcacaaga---ctaacaaaacaacgcctcaattagacgacgaaatcacaaaaacacaata--gaaaacttgatttgtgtgaaaacc 17994883  T
Q  128 acnnnnnnnagaacgagagaaaagaggaaaaaagatgtagcg-ggtgattttaggtc-aaaaatgacctaaaacca 201  Q
    ||       |||  || |||||| ||||||||||||| || | |||||||||||| | ||||||||||||||||||    
T  17994884 ac-ttattaagattgaaagaaaataggaaaaaagatgcagagaggtgattttagggcaaaaaatgacctaaaacca 17994958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 19062407 - 19062522
Alignment:
Q  15 ctgtgacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcga 113  Q
    ||||||||| ||| ||||||||| | ||||||||| ||| ||||||||||||| | | ||||| ||||| || || ||||||| || | |||||||| ||    
T  19062407 ctgtgacaagacgtgaaatcaaatgccgcacaagacgacgaacaacacaacgctgcacttagacgacgatatcacaaaaaacataaaaggaaaaacttga 19062506  T
Q  114 tatatgtgaaaaccac 129  Q
    || |||||||||||||    
T  19062507 tagatgtgaaaaccac 19062522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 37994164 - 37994104
Alignment:
Q  169 gggtgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    |||||||| |||||||||||||||||||||||| || | ||||| || |||||||||||||    
T  37994164 gggtgattctaggtcaaaaatgacctaaaaccacccttcctcgatgattgaaagagaaaga 37994104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 19028973 - 19029064
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaact 110  Q
    ||||| ||||||||||||| | |||||| || ||| || |||||||||||| | ||||| |||||||| ||| |||||||| | ||||||||    
T  19028973 gacaagacgcgaaatcaaatgccgcacatgacgacgaataacacaacgccgaacttagacgacgaaatcacataaacacaaaaggaaaaact 19029064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 25509138 - 25509233
Alignment:
Q  30 aaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatatgtgaaaacca 128  Q
    |||||||||||||||||||| || |||||||||||||| | ||||||| |  ||||| || ||||||||| | |||||||| ||||||| | |||||||    
T  25509138 aaatcaaacgtcgcacaagacgaataacaacacaacgctgcaattagacg--gaaattac-aaaacacaaaaggaaaaacttgatatatcttaaaacca 25509233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 228
Target Start/End: Complemental strand, 11833477 - 11833314
Alignment:
Q  64 acgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatatgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagat 163  Q
    |||||| ||||||| |||||||| |||||||||||| |  ||||||  ||||||||||||||||||       | |  || ||||||||| |||||||||    
T  11833477 acgccgcaattagacgacgaaatcacaaaaacacaaga--aaaaacaagatatatgtgaaaaccacttatttaa-attgaaagaaaagagaaaaaaagat 11833381  T
Q  164 gtagcgg-gtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaag 228  Q
    |||  ||  |||||||| ||| |||||||||||||||||| || |||| || ||||||| |||||||    
T  11833380 gtaaaggaatgattttaagtcaaaaaatgacctaaaaccacccattctagaggaatgaatgagaaag 11833314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 18763503 - 18763434
Alignment:
Q  25 acgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa 94  Q
    ||||||||||||||| ||||||||| ||| ||||||||||| ||| | ||||| || ||||| |||||||    
T  18763503 acgcgaaatcaaacgccgcacaagacgacgaacaacacaacaccgcacttagacgatgaaatcacaaaaa 18763434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 1421717 - 1421605
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaa-aaactcgatat 116  Q
    ||||| |||||||||||||||  |||||||| ||| ||||||| ||| ||| | ||||| |||||||| || |||||||||| || || ||| | ||||     
T  1421717 gacaagacgcgaaatcaaacgctgcacaagacgacgaacaacataacaccgcacttagacgacgaaatcacaaaaaacacaaaaaaaataaaattgatag 1421618  T
Q  117 atgtgaaaaccac 129  Q
    |||||||||||||    
T  1421617 atgtgaaaaccac 1421605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 33923743 - 33923671
Alignment:
Q  22 aaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa 94  Q
    |||||||||||||||||| ||||||||| ||| ||||||| |||  |||| |||||  ||||||| |||||||    
T  33923743 aaaacgcgaaatcaaacgccgcacaagacgacgaacaacagaacatcgtacttagacaacgaaatcacaaaaa 33923671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 36691907 - 36691808
Alignment:
Q  27 gcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac--aaaaacacaataagaaaaactcgatatatgtgaaa 124  Q
    ||||||||||||||||||| | | ||  ||||||| ||||||| | ||||| |||||||| ||  |||||||||| |  ||||||| |||||||||||||    
T  36691907 gcgaaatcaaacgtcgcactaaacgatgaacaacaaaacgccgcacttagacgacgaaatcacgaaaaaacacaaaagaaaaaacttgatatatgtgaaa 36691808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 39310918 - 39311022
Alignment:
Q  26 cgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgtgaaa 124  Q
    ||||||||||||||  |||||||| ||  ||||||||||| ||  | |||||||| ||||| || |||||| ||| | |||||||| |||| ||||||||    
T  39310918 cgcgaaatcaaacgctgcacaagacgaagaacaacacaacaccacacttagatgatgaaatcacaaaaaacccaaaaggaaaaacttgataaatgtgaaa 39311017  T
Q  125 accac 129  Q
    |||||    
T  39311018 accac 39311022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 29173814 - 29173889
Alignment:
Q  55 aacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgtgaaaaccac 129  Q
    ||||||||||||||| | ||||| |||||||| || |||||||||| | |||||||  || |||||||||||||||    
T  29173814 aacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaaaggaaaaacctgaaatatgtgaaaaccac 29173889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 29574842 - 29574901
Alignment:
Q  169 gggtgattttaggtcaaaaa-tgacctaaaaccatcccttctcgacgaatgaaagagaaa 227  Q
    |||||||| ||||||||||| ||| ||||||||| |||| |||||||| |||||||||||    
T  29574842 gggtgattctaggtcaaaaaatgatctaaaaccacccctcctcgacgagtgaaagagaaa 29574901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 32448830 - 32448885
Alignment:
Q  169 gggtgattttaggtcaaa-aatgacctaaaaccatcccttctcgacgaatgaaaga 223  Q
    |||||||||||||||||| ||||||||||||||| |||| ||||| || |||||||    
T  32448830 gggtgattttaggtcaaataatgacctaaaaccacccctcctcgatgagtgaaaga 32448885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 36175652 - 36175711
Alignment:
Q  170 ggtgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    ||||||| | |||||||||||||||||||||| | ||||| || ||||||| ||||||||    
T  36175652 ggtgattatcggtcaaaaatgacctaaaaccacctcttcttgatgaatgaaggagaaaga 36175711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 12648109 - 12648194
Alignment:
Q  145 agaaaagaggaaaaaagatgtagcggg-tgattttaggtcaaaa-atgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    ||||||||| ||||||||||| | ||| ||||| |||||||||| |||||||||||||| |||| ||| |||| | |||||||||||    
T  12648109 agaaaagag-aaaaaagatgtggaggggtgattctaggtcaaaaaatgacctaaaaccacccctcctcaacgagtaaaagagaaaga 12648194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 37876665 - 37876739
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaa 93  Q
    ||||| ||||||||||||| | ||||||||| ||| ||||||| ||||||| | ||||| ||| |||| ||||||    
T  37876665 gacaagacgcgaaatcaaatgccgcacaagacgacgaacaacaaaacgccgcacttagacgaccaaatcacaaaa 37876739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 30400250 - 30400307
Alignment:
Q  171 gtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaa 227  Q
    ||||||||||||| |||||||| ||||||||| | |||||||| ||||||| ||||||    
T  30400250 gtgattttaggtcaaaaaatgatctaaaaccacctcttctcgatgaatgaaggagaaa 30400307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 27110521 - 27110732
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| |||| |||||||||| | ||||||| ||||| ||||||||||| | |||||||||||||||| |||||||||||| | |||||||| |||||||    
T  27110521 gacaagacgcaaaatcaaacgccacacaagacgactaccaacacaacgctgcaattagatgacgaaattacaaaaacacaaaaggaaaaacttgatatat 27110620  T
Q  119 gtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacgaa 216  Q
    ||||| |||||       |||  || ||||||||| |||||||||||||  | |||||||||| || |||||||||||||||||| || |  |||| |||    
T  27110621 gtgaagaccac-ttatttagattgaaagaaaagagtaaaaaagatgtagatgtgtgattttagatcaaaaaatgacctaaaaccacccatcttcgatgaa 27110719  T
Q  217 tgaaagagaaaga 229  Q
    |||| ||||||||    
T  27110720 tgaaggagaaaga 27110732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 7883297 - 7883480
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||| ||| ||||||||||| ||||||||| ||| ||||||||||||||| | |||||||||||||| || |||||||||| |||||||||| |||| |    
T  7883297 gacaagacgtgaaatcaaacgccgcacaagacgacgaacaacacaacgccgcacttagatgacgaaatcacaaaaaacacaa-aagaaaaacttgataga 7883395  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaaga-ggaaaaaagatgtag-cgggtgattttaggtcaaaaatgacctaaaacca 201  Q
    ||||||||||||       |||  || |||||||| |||||||||||||||  |||||||| ||| ||||||||||||||||||||    
T  7883396 tgtgaaaaccac-ttatttagattgaaagaaaagagggaaaaaagatgtagaggggtgattatagatcaaaaatgacctaaaacca 7883480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 28897742 - 28897541
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| ||||||||||||||| | |||| ||||||||||||||||||| || |||||||  ||||||| |||||||||  || || |||||| ||||||     
T  28897742 gacaagacgcgaaatcaaacgccacacacgatgactaacaacacaacgtcgcaattagacaacgaaatcacaaaaacatcat-aggaaaacttgatatac 28897644  T
Q  119 gtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacgaa 216  Q
     ||||||||||       |||  || |||||||||||||||||||||||  |||||||||||| || ||||||||| |||||||| |||| |||||||||    
T  28897643 atgaaaaccac-ttatttagattgaaagaaaagaggaaaaaagatgtagaggggtgattttagatcaaaaaatgacttaaaaccacccctcctcgacgaa 28897545  T
Q  217 tgaa 220  Q
    ||||    
T  28897544 tgaa 28897541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 14544959 - 14545143
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| ||| ||||||||||| | ||||||| ||||||||| ||||||||| ||||||| |||||||| ||||||| |||| | |||||  | |||||||    
T  14544959 gacaagacgtgaaatcaaacgccacacaagacgactaacaaaacaacgccgcaattagacgacgaaatcacaaaaatacaaaaggaaaattttgatatat 14545058  T
Q  119 gtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgt--agcgggtgattttaggtc-aaaaatgacctaaaacca 201  Q
    |||||||||||       |||  || ||||||||| |||||||||||  || ||||||||||||||| ||||||||||||||||||    
T  14545059 gtgaaaaccac-ttatttagattgaaagaaaagagaaaaaaagatgtagagagggtgattttaggtcaaaaaatgacctaaaacca 14545143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 40619138 - 40619307
Alignment:
Q  28 cgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgtgaaaac 126  Q
    |||||||||||||| ||||||| ||| ||||||||||||||| | ||||| || ||||| || |||||||||| |||||||||| ||||||||||||||     
T  40619138 cgaaatcaaacgtcacacaagacgacaaacaacacaacgccgcacttagacgatgaaatcacaaaaaacacaaaaagaaaaacttgatatatgtgaaaat 40619237  T
Q  127 cacnnnnnnnagaacgagagaaaagaggaaaaaagatgtagcggg-tgattttaggtcaaaaatgacctaaa 197  Q
    |||       |||  || |||||||| ||||||| |||||| ||| ||||| ||||||||||||||||||||    
T  40619238 cac-ttatttagattgatagaaaaga-gaaaaaatatgtagagggatgattctaggtcaaaaatgacctaaa 40619307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 7677339 - 7677445
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| ||||||||||||| |  |||||||| ||| ||||||||||||||| ||||||| || ||||| |||||||||||| ||  |||||| |||||||    
T  7677339 gacaagacgcgaaatcaaatgcagcacaagacgacgaacaacacaacgccgcaattagacgatgaaatcacaaaaacacaa-aaacaaaacttgatatat 7677437  T
Q  119 gtgaaaac 126  Q
    ||||||||    
T  7677438 gtgaaaac 7677445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 23230676 - 23230566
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| ||||||||||||||| ||||||||| ||| ||||||| | ||||| | ||||| |||||||| |||||||||||| |  ||||||| |||| ||    
T  23230676 gacaagacgcgaaatcaaacgccgcacaagacgacgaacaacaaatcgccgcacttagacgacgaaatcacaaaaacacaaaagaaaaaacttgatagat 23230577  T
Q  119 gtgaaaaccac 129  Q
     ||||||||||    
T  23230576 atgaaaaccac 23230566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 45445867 - 45445979
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataa--gaaaaactcgatat 116  Q
    ||||||| ||||||||||||| ||||||||| ||| ||||| |||||| |||| ||||| |||||||| | ||||||| || ||   ||||||| |||||    
T  45445867 gacaaaatgcgaaatcaaacgccgcacaagacgacgaacaatacaacgtcgtacttagacgacgaaatcaaaaaaacaaaaaaaagaaaaaacttgatat 45445966  T
Q  117 atgtgaaaaccac 129  Q
     ||||||||||||    
T  45445967 gtgtgaaaaccac 45445979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 10377722 - 10377647
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa 94  Q
    ||||||||||||||||||||| ||||||||| | | ||||||||||||||| | |||||  ||||||| |||||||    
T  10377722 gacaaaacgcgaaatcaaacgccgcacaagacggcgaacaacacaacgccgcacttagacaacgaaatcacaaaaa 10377647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 14916344 - 14916399
Alignment:
Q  169 gggtgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaatgaaagag 224  Q
    |||||||| |||||||||||||||||||||||| |||| ||||| |||||||||||    
T  14916344 gggtgattctaggtcaaaaatgacctaaaaccacccctcctcgaagaatgaaagag 14916399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 25191123 - 25191198
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa 94  Q
    ||||||| ||||||||||||| ||||||||| ||| ||||||||||||| ||| |||||  ||||||| |||||||    
T  25191123 gacaaaaagcgaaatcaaacgccgcacaagacgacgaacaacacaacgctgtacttagacaacgaaattacaaaaa 25191198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 27498420 - 27498527
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaa-acacaataagaaaaactcgatata 117  Q
    ||||| ||||||||||||| ||||||||||| ||| |||||||||| | |  | ||||| |||||||| |||||| ||| || | |||||||| ||||||    
T  27498420 gacaagacgcgaaatcaaatgtcgcacaagacgacgaacaacacaatggcacacttagacgacgaaattacaaaatacataaaaggaaaaacttgatata 27498519  T
Q  118 tgtgaaaa 125  Q
    ||| ||||    
T  27498520 tgtaaaaa 27498527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 28086869 - 28086944
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa 94  Q
    ||||| ||||||||||||| |  |||||||||||| ||||||||||||| | | ||||| |||||||| |||||||    
T  28086869 gacaagacgcgaaatcaaatgctgcacaagatgacgaacaacacaacgcagcacttagacgacgaaatcacaaaaa 28086944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 37971313 - 37971242
Alignment:
Q  22 aaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaa 93  Q
    |||| ||||||||||||| ||||||||| ||| ||||||| ||||||| | ||||| |||||||| ||||||    
T  37971313 aaaaagcgaaatcaaacgccgcacaagacgacgaacaacaaaacgccgcacttagacgacgaaatcacaaaa 37971242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 8981079 - 8981021
Alignment:
Q  169 gggtgattttaggtcaaaaa-tgacctaaaaccatcccttctcgacgaatgaaagagaa 226  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||||| |||| |||||    
T  8981079 gggtgattttaggtcaaaaaatgacctaaaaccacccctcctcgacgagtgaatgagaa 8981021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 31013753 - 31013839
Alignment:
Q  145 agaaaagaggaaaaaagatgtagcggg-tgattttaggtcaaaa-atgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    ||||||| || |||||||||||| ||| ||||| |||||||||| |||||||||||||| |||| ||||| ||| ||| ||||||||    
T  31013753 agaaaagggggaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctcctcgatgaacgaaggagaaaga 31013839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 3673340 - 3673267
Alignment:
Q  157 aaaagatgtagcggg-tgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||||| ||||  |||| |||| || ||||||||    
T  3673340 aaaagatgtagagggatgattctaggtcaaaaatgacctaaaaccaaccctcttcgatgaataaaggagaaaga 3673267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 15344210 - 15344130
Alignment:
Q  148 aaagaggaaaaaagatgtagcggg-tgattttaggtcaaa-aatgacctaaaaccatcccttctcgacgaatgaaagagaa 226  Q
    |||| |||||||||||| || ||| | ||||||||||||| ||||||||||||||| |||| ||||| || ||||||||||    
T  15344210 aaaggggaaaaaagatgcagaggggtaattttaggtcaaagaatgacctaaaaccacccctcctcgatgagtgaaagagaa 15344130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 15433275 - 15433195
Alignment:
Q  148 aaagaggaaaaaagatgtagcggg-tgattttaggtcaaa-aatgacctaaaaccatcccttctcgacgaatgaaagagaa 226  Q
    |||| |||||||||||| || ||| | ||||||||||||| ||||||||||||||| |||| ||||| || ||||||||||    
T  15433275 aaaggggaaaaaagatgcagaggggtaattttaggtcaaagaatgacctaaaaccacccctcctcgatgagtgaaagagaa 15433195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 15524579 - 15524499
Alignment:
Q  148 aaagaggaaaaaagatgtagcggg-tgattttaggtcaaa-aatgacctaaaaccatcccttctcgacgaatgaaagagaa 226  Q
    |||| |||||||||||| || ||| | ||||||||||||| ||||||||||||||| |||| ||||| || ||||||||||    
T  15524579 aaaggggaaaaaagatgcagaggggtaattttaggtcaaagaatgacctaaaaccacccctcctcgatgagtgaaagagaa 15524499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 16247279 - 16247351
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaa 91  Q
    ||||| ||| ||||||||||||||||||||| ||  ||||||||||||||| | ||||| || ||||| ||||    
T  16247279 gacaagacgtgaaatcaaacgtcgcacaagacgatgaacaacacaacgccgcacttagacgaagaaatcacaa 16247351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 17693805 - 17693881
Alignment:
Q  154 gaaaaaagatgtagcggg-tgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    |||||||||||||| ||| ||||| |||||||||||||||||||||| | |||| ||| | ||| ||| ||||||||    
T  17693805 gaaaaaagatgtagagggatgattctaggtcaaaaatgacctaaaacaacccctcctcaatgaacgaaggagaaaga 17693881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 24099469 - 24099528
Alignment:
Q  169 gggtgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    |||||||| |||||||||||||||||||| ||| |||| ||||| || |||||||||||||    
T  24099469 gggtgattctaggtcaaaaatgacctaaagcca-ccctactcgatgattgaaagagaaaga 24099528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 24186716 - 24186822
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||||||||||||||||| | | |||||||  |||||||||||||| ||  |||||||  || |||| | ||| |||||| |  ||||||| |||||||    
T  24186716 gacaaaacgcgaaatcaaatgccacacaagacaactaacaacacaacaccacaattagactacaaaatcaaaaacacacaaaagcaaaaacttgatatat 24186815  T
Q  119 gtgaaaa 125  Q
     ||||||    
T  24186816 atgaaaa 24186822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 37971199 - 37971141
Alignment:
Q  145 agaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaacca 201  Q
    ||||||| |||||||||||||||  |||||||| |||||| ||||||||||||||||||    
T  37971199 agaaaaggggaaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaacca 37971141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 29938021 - 29937964
Alignment:
Q  145 agaaaagaggaaaaaagatgtagcggg-tgattttaggtcaaaaatgacctaaaacca 201  Q
    |||||||  |||||||||||||| ||| ||||| |||||||||||||| |||||||||    
T  29938021 agaaaaggcgaaaaaagatgtagaggggtgattctaggtcaaaaatgatctaaaacca 29937964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 36948493 - 36948605
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaa--ataacaaaaacacaataagaaaaactcgatat 116  Q
    ||||| ||||||||||||||| |||||| || ||| |||||||||||||   | ||||| || |||  | || |||||||||| | |||||| | |||||    
T  36948493 gacaagacgcgaaatcaaacgccgcacaggacgacaaacaacacaacgcaacacttagacgatgaaacaaaaaaaaaacacaaaaggaaaaatttgatat 36948592  T
Q  117 atgtgaaaaccac 129  Q
    || ||||||||||    
T  36948593 atatgaaaaccac 36948605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 44091810 - 44091915
Alignment:
Q  25 acgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaa-aacacaataagaaaaactcgatatatgtgaa 123  Q
    |||| ||||||||||||  |||||| ||  || |||||||| | | | |||||| ||||||| ||||| ||||||| | |||||||| |||| |||||||    
T  44091810 acgcaaaatcaaacgtcagacaagacgaagaataacacaacactgcatttagataacgaaatcacaaataacacaaaaggaaaaacttgatagatgtgaa 44091909  T
Q  124 aaccac 129  Q
    ||||||    
T  44091910 aaccac 44091915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 18890779 - 18890869
Alignment:
Q  36 aacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac--aaaaacacaataagaaaaactcgatatatgtgaaaa 125  Q
    |||||||||||||| ||| |||||||||||| || | | ||| |||||||| ||  |||||||||| |||||||||| |||  |||||||||    
T  18890779 aacgtcgcacaagacgacgaacaacacaacgtcgcactaagacgacgaaatcacgaaaaaacacaa-aagaaaaacttgatgcatgtgaaaa 18890869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 10100 - 10210
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| ||||||||||||||| ||||||||| ||| ||||| |||| |||| | ||||| |||||||| |||||||||||| | |||||||| |||||||    
T  10100 gacaagacgcgaaatcaaacgccgcacaagacgacgaacaaaacaaagccgcacttagacgacgaaatcacaaaaacacaaaaggaaaaacttgatatat 10199  T
Q  119 gtgaaaaccac 129  Q
    |||||||||||    
T  10200 gtgaaaaccac 10210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 38040 - 37966
Alignment:
Q  55 aacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatatgtgaaaaccac 129  Q
    |||||||||| |||| | |||||||||||||||| |||||||||| | |||||||| || |||||||||||||||    
T  38040 aacaacacaatgccgcacttagatgacgaaataaaaaaaacacaaaaggaaaaacttgacatatgtgaaaaccac 37966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 32805 - 32917
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac--aaaaacacaataagaaaaactcgatat 116  Q
    ||||| ||||||||||||||| ||||||||| ||| ||||||| ||||||| | ||||| |||||||| ||  |||||||||| | |||||||| ||||     
T  32805 gacaagacgcgaaatcaaacgccgcacaagacgacgaacaacaaaacgccgcacttagacgacgaaatcacaaaaaaacacaaaaggaaaaacttgatag 32904  T
Q  117 atgtgaaaaccac 129  Q
    |||||||||||||    
T  32905 atgtgaaaaccac 32917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 15523 - 15311
Alignment:
Q  19 gacaaaacgcgaaatcaaa-cgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatat 116  Q
    ||||| ||||||||||||| || ||||||||| ||| ||||||||||| ||| | |||||||||||||| || |||||||||| | |||||||| || |     
T  15523 gacaagacgcgaaatcaaaacgccgcacaagacgacgaacaacacaacaccgcacttagatgacgaaatcacaaaaaacacaaaaggaaaaacttgaaag 15424  T
Q  117 atgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacg 214  Q
    || ||||||||||       |||  || ||||||| || ||||||||||||  |||||||| |||||| |||||||||||||||||| |||| ||||| |    
T  15423 atatgaaaaccac-ttatttagattgaaagaaaag-gggaaaaagatgtagaggggtgattctaggtcaaaaaatgacctaaaaccacccctcctcgaag 15326  T
Q  215 aatgaaagagaaaga 229  Q
    || ||| ||||||||    
T  15325 aacgaaggagaaaga 15311  T

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Target: scaffold0445 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 1374 - 1163
Alignment:
Q  20 acaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacaca-ataaga-aaaactcgatata 117  Q
    |||| ||||||||||||||| | ||||||| ||| ||||||||||||||| | ||||| || ||||| ||||||| ||| | |||| |||||| ||||||    
T  1374 acaagacgcgaaatcaaacgccacacaagacgacgaacaacacaacgccgcacttagacgaagaaatcacaaaaaaacacaaaagagaaaacttgatata 1275  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacga 215  Q
    ||||||||||||       |||  || ||||||| |||||||||| ||||  |||||||| |||||| |||||||||||||||||| | || ||||| ||    
T  1274 tgtgaaaaccac-ttatttagagtgaaagaaaag-ggaaaaaagaagtagaggggtgattctaggtcaaaaaatgacctaaaaccacctctcctcgatga 1177  T
Q  216 atgaaagagaaaga 229  Q
    | ||| ||||||||    
T  1176 acgaaggagaaaga 1163  T

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Target: scaffold0262 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 1877 - 2056
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatat 118  Q
    ||||| |||||||| |||||| |||||||||||||||| |||   | |||| | | ||| |||||||| |||||||||||| | |||||||| |||||||    
T  1877 gacaagacgcgaaaccaaacgacgcacaagatgactaataacctgaggccgcattcagacgacgaaatcacaaaaacacaaaaggaaaaacttgatatat 1976  T
Q  119 gtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtcaaaaatgacctaaaa 198  Q
    ||| |||||||       | |  || |||||||||||||||||||||||  | |||||||||||| ||||| |||||||||    
T  1977 gtgcaaaccacttatttaa-attgaaagaaaagaggaaaaaagatgtagatgagtgattttaggtaaaaaaagacctaaaa 2056  T

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Target: scaffold0121 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 31330 - 31436
Alignment:
Q  17 gtgacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatat 116  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||||| ||||||  ||||||| |  ||||| || ||||||||| | |||||||| |||||    
T  31330 gtgacaagacgggaaatcaaacgtcgcacaagacgactaacaacataacgccacaattagacg--gaaatcac-aaaacacaaaaggaaaaacttgatat 31426  T
Q  117 atgtgaaaac 126  Q
    ||||||||||    
T  31427 atgtgaaaac 31436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 36858 - 36750
Alignment:
Q  22 aaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaa-aactcgatatatgt 120  Q
    |||||||||||||||||| ||||||||| ||||| ||||||||||||  ||||||| |||| ||| ||||||| |||| | |||| |||| ||||  |||    
T  36858 aaaacgcgaaatcaaacgccgcacaagacgactaccaacacaacgccacaattagacgacggaatcacaaaaatacaaaaggaaagaacttgatacttgt 36759  T
Q  121 gaaaaccac 129  Q
    |||||||||    
T  36758 gaaaaccac 36750  T

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Target: scaffold0026 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 71922 - 72134
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatata 117  Q
    ||||||||| ||||||||||  |||||||||  || ||||||||||||||| | ||||| |||||||| || ||||||||||   |||||||| |||| |    
T  71922 gacaaaacgtgaaatcaaactccgcacaagacaacgaacaacacaacgccgcacttagacgacgaaatcacaaaaaacacaaatggaaaaacttgataga 72021  T
Q  118 tgtgaaaaccacnnnnnnnagaacgagagaaaagaggaaaaaagatgtag-cgggtgattttaggtc-aaaaatgacctaaaaccatcccttctcgacga 215  Q
    ||||||||||||        ||  || ||||||| || ||||||||| ||   ||||||| |||||| |||||||||||||||||| |||| ||||| ||    
T  72022 tgtgaaaaccacttatttg-gattgaaagaaaagggggaaaaagatgaagaatggtgattctaggtcaaaaaatgacctaaaaccacccctcctcgatga 72120  T
Q  216 atgaaagagaaaga 229  Q
    | ||| ||||||||    
T  72121 acgaaggagaaaga 72134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 8543 - 8432
Alignment:
Q  19 gacaaaacgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa-cacaataagaaaaactcgatata 117  Q
    ||||| |||||||||||||||  |||||||| ||  ||||| ||||||||| | |||||||||||||| ||||||| ||||| |  ||||||| ||||||    
T  8543 gacaagacgcgaaatcaaacgctgcacaagacgatgaacaatacaacgccgcacttagatgacgaaatcacaaaaatcacaaaagcaaaaactggatata 8444  T
Q  118 tgtgaaaaccac 129  Q
    ||| ||||||||    
T  8443 tgtaaaaaccac 8432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 50781 - 50605
Alignment:
Q  55 aacaacacaacgccgtaattagatgacgaaataac-aaaaacacaataagaaaaactcgatatatgtgaaaaccacnnnnnnnagaacgagagaaaagag 153  Q
    ||||||||||||||| | ||||| |||||||| || |||||||||| | |||||||| |||| |||||||||||||       |||  || ||||||| |    
T  50781 aacaacacaacgccgcacttagacgacgaaatcacgaaaaacacaaaaggaaaaacttgatagatgtgaaaaccac-ttatttagattgaaagaaaaggg 50683  T
Q  154 gaaaaaagatgtagcggg-tgattttaggtcaaaaa-tgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    |||||||||||||| ||| ||||| ||||||||||| |||||||||| || |||| ||| | ||| ||| ||||||||    
T  50682 gaaaaaagatgtagagggatgattctaggtcaaaaagtgacctaaaatcacccctcctcaatgaacgaaggagaaaga 50605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 7741 - 7635
Alignment:
Q  25 acgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaa--cacaataagaaaaactcgatatatgtga 122  Q
    ||||||| ||||||| | ||||||| ||| ||||||||||||||| | | ||||||| || | |||||||  ||||| | |||||||| |||||||||||    
T  7741 acgcgaattcaaacgccacacaagacgacaaacaacacaacgccgcactcagatgacaaattcacaaaaaaacacaaaaggaaaaacttgatatatgtga 7642  T
Q  123 aaaccac 129  Q
    |||||||    
T  7641 aaaccac 7635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 7595 - 7536
Alignment:
Q  171 gtgattttaggtcaaaaa-tgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    |||||| ||||||||||| |||||||||||||||||| ||||| |||| || ||||||||    
T  7595 gtgattctaggtcaaaaaatgacctaaaaccatccctcctcgatgaataaaggagaaaga 7536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 71492 - 71533
Alignment:
Q  169 gggtgattttaggtcaaaaatgacctaaaaccatcccttctc 210  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  71492 gggtgattttaggtcaaaaatgacctaaaaccaccccttctc 71533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 58288 - 58343
Alignment:
Q  169 gggtgattttaggtcaaaa-atgacctaaaaccatcccttctcgacgaatgaaaga 223  Q
    ||||||||||||||||||| |||||||||||||| |||| |||||||| |||||||    
T  58288 gggtgattttaggtcaaaaaatgacctaaaaccacccctcctcgacgagtgaaaga 58343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0884 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 2039 - 2136
Alignment:
Q  27 gcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaaaacacaataagaaaaactcgatatatgtgaaa 124  Q
    ||||||||||||| | || |||| ||| ||||||| || |||| | ||||| || ||||| |||||||||||| |  ||||||| |||| ||||||||    
T  2039 gcgaaatcaaacgccacataagacgacgaacaacaaaatgccgcacttagacgatgaaatcacaaaaacacaaaagaaaaaacttgatagatgtgaaa 2136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 8100 - 7995
Alignment:
Q  25 acgcgaaatcaaacgtcgcacaagatgactaacaacacaacgccgtaattagatgacgaaataacaaa-aacacaataagaaaaactcgatatatgtgaa 123  Q
    |||| ||||||||||||  |||||| ||  || |||||||| | | | |||||| ||||||| ||||| ||||||| | |||||||| |||| |||||||    
T  8100 acgcaaaatcaaacgtcagacaagacgaagaataacacaacactgcatttagataacgaaatcacaaataacacaaaaggaaaaacttgatagatgtgaa 8001  T
Q  124 aaccac 129  Q
    ||||||    
T  8000 aaccac 7995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 19246 - 19306
Alignment:
Q  169 gggtgattttaggtcaaaaatgacctaaaaccatcccttctcgacgaatgaaagagaaaga 229  Q
    |||| ||| ||||||||||| ||| |||||||| |||| ||||| || |||||||||||||    
T  19246 gggtaattctaggtcaaaaacgacataaaaccacccctcctcgatgagtgaaagagaaaga 19306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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