View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17900_low_5 (Length: 216)
Name: NF17900_low_5
Description: NF17900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17900_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 37169519 - 37169687
Alignment:
| Q |
17 |
caacccaaccccttttctgtgttaaactcagttttattttaa--------------atacacatcacaaccacctccccctatagtcagtcctataccct |
102 |
Q |
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| T |
37169519 |
caacccaaccctttttctgtgttaaactcagttttattttaacctcattagcttaaatacacatcacaaccacctccccctatagtcagtcctataccct |
37169618 |
T |
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| Q |
103 |
atttctggtctaacctgtgcctcttttattactctgaataaaataaaaatcttcgtacaaataaaattt |
171 |
Q |
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| T |
37169619 |
atttctggtctaacctgtgcctcttttattactctgaataaaataaaaatcttcgtacaaataaaattt |
37169687 |
T |
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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 199
Target Start/End: Original strand, 37169700 - 37169734
Alignment:
| Q |
165 |
aaaattttgtgctcccaaaaccctaaccaaaactt |
199 |
Q |
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| T |
37169700 |
aaaattttgtgctcccaaaaccctaaccaaaactt |
37169734 |
T |
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