View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17901_high_1 (Length: 765)

Name: NF17901_high_1
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17901_high_1
NF17901_high_1
[»] chr2 (6 HSPs)
chr2 (9-490)||(5446693-5447173)
chr2 (592-724)||(5447165-5447299)
chr2 (413-455)||(5431864-5431906)
chr2 (283-337)||(5431986-5432040)
chr2 (549-578)||(9064626-9064655)
chr2 (549-578)||(36171523-36171552)
[»] scaffold0238 (1 HSPs)
scaffold0238 (488-574)||(25388-25467)
[»] chr7 (3 HSPs)
chr7 (549-580)||(44454505-44454536)
chr7 (550-579)||(13017084-13017113)
chr7 (553-582)||(46551986-46552015)
[»] chr6 (3 HSPs)
chr6 (503-576)||(32524418-32524484)
chr6 (489-543)||(404186-404240)
chr6 (549-578)||(28237295-28237324)
[»] chr3 (5 HSPs)
chr3 (549-580)||(7464528-7464559)
chr3 (549-579)||(7738663-7738693)
chr3 (549-579)||(18554723-18554753)
chr3 (553-586)||(28244145-28244178)
chr3 (549-578)||(50659588-50659617)
[»] chr1 (5 HSPs)
chr1 (488-543)||(5907822-5907877)
chr1 (549-584)||(30678850-30678885)
chr1 (518-548)||(32864310-32864340)
chr1 (549-579)||(37013982-37014012)
chr1 (549-578)||(47478891-47478920)
[»] chr4 (1 HSPs)
chr4 (549-579)||(20043229-20043259)
[»] scaffold0038 (1 HSPs)
scaffold0038 (549-578)||(37457-37486)
[»] chr5 (1 HSPs)
chr5 (503-548)||(38784070-38784115)


Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 9 - 490
Target Start/End: Original strand, 5446693 - 5447173
Alignment:
Q  9 tgagatgaatgatgagggatgccgagcggtataaggcagaggatgaggaggttaggaagaaggtgaaagcgaagaacttgtttgagaattatgtttatga 108  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5446693 tgagaagaatgatgagggatgccgagcggtataaggcagaggatgaggaggttaggaagaaggtgaaagcaaagaacttgtttgagaattatgtttatga 5446792  T
Q  109 aacgagggagagagtgaagaaacttgagaaggtagtggaggaaagtatagaatggtttgacagaaaccaattggcagaaattgatgagtttgaattcaag 208  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5446793 aatgagggagagagtgaagaaacttgagaaggtagtggaggaaagtatagaatggtttgaaagaaaccaattggcagaaattgatgagtttgaattcaag 5446892  T
Q  209 aagcaggagttggaaaatagtatgaagtttctctaattgtgatgctaggtaaaagatttaagaacaagtttcttgagtgtgaggcaatgtaaaattgttt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5446893 aagcaggagttggaaaatagtatgaagtttctctaattgtgatgctaggtaaaagatttaagaacaagtttcttgagtgtgaagcaatgtaaaattgttt 5446992  T
Q  309 gagctttgttaatcaattagtgtctatgaaattctc--gtctagtttatgcttaatttctatcctagagaaactaatggttatgcaataatgcaagaatt 406  Q
    || |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5446993 gaactttgttaatcaattagtgtctatgaaattctcttgtctagtttatgcttaatttctatcctagagaaactaatggttatgcaataatgcaagaatt 5447092  T
Q  407 gttataattacgttgtgatgatgtgtgtgcaatgcaatcaattaattacgttgttgagtttattaagaagtcttctatgacttt 490  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||   |||||||||||||||||    
T  5447093 gttataattacgttgtgatgatgtgtgtgcaatgcaatcgattaattactttgttgagtttatt---aagtcttctatgacttt 5447173  T

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Target: chr2; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 592 - 724
Target Start/End: Original strand, 5447165 - 5447299
Alignment:
Q  592 tatgactttgatcggta--gttaggaaaattgagtagcttagaagaccataaagtcattaagatggacccaaatatactcgttgaacagatagaaatacc 689  Q
    |||||||||||||||||  |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5447165 tatgactttgatcggtatagttaggaaaattaagtagcttagaagaccataaactcattaagatggacccaaatatactcgttgaacagatagaaatacc 5447264  T
Q  690 actccgattgacccaaattatatgcttttcttttt 724  Q
    |||||| ||||||||||||||||||||||||||||    
T  5447265 actccggttgacccaaattatatgcttttcttttt 5447299  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 413 - 455
Target Start/End: Complemental strand, 5431906 - 5431864
Alignment:
Q  413 attacgttgtgatgatgtgtgtgcaatgcaatcaattaattac 455  Q
    ||||| ||| |||||||| ||||||||||||||||||||||||    
T  5431906 attactttgagatgatgtttgtgcaatgcaatcaattaattac 5431864  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 283 - 337
Target Start/End: Complemental strand, 5432040 - 5431986
Alignment:
Q  283 gagtgtgaggcaatgtaaaattgtttgagctttgttaatcaattagtgtctatga 337  Q
    |||| ||| |||||||||||| ||||||||||  ||| |||||||||||||||||    
T  5432040 gagtctgaagcaatgtaaaatagtttgagcttcattactcaattagtgtctatga 5431986  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 578
Target Start/End: Original strand, 9064626 - 9064655
Alignment:
Q  549 tccctaccaactgagttaagctcacgagga 578  Q
    ||||||||||||||||||||||||||||||    
T  9064626 tccctaccaactgagttaagctcacgagga 9064655  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 578
Target Start/End: Complemental strand, 36171552 - 36171523
Alignment:
Q  549 tccctaccaactgagttaagctcacgagga 578  Q
    ||||||||||||||||||||||||||||||    
T  36171552 tccctaccaactgagttaagctcacgagga 36171523  T

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Target: scaffold0238 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 488 - 574
Target Start/End: Complemental strand, 25467 - 25388
Alignment:
Q  488 ttttttggtcgtgtctggggtttgtaacttggactttgcatatattatgcattgtctctactccctaccaactgagttaagctcacg 574  Q
    ||||||||| |||||||||||| | | | ||||| |||||||||||||||||||       ||| ||||||||||||||||||||||    
T  25467 ttttttggtggtgtctggggttcgaaccctggaccttgcatatattatgcattg-------tccttaccaactgagttaagctcacg 25388  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 580
Target Start/End: Complemental strand, 44454536 - 44454505
Alignment:
Q  549 tccctaccaactgagttaagctcacgaggacc 580  Q
    ||||||||||||||||||||||||||||||||    
T  44454536 tccctaccaactgagttaagctcacgaggacc 44454505  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 579
Target Start/End: Complemental strand, 13017113 - 13017084
Alignment:
Q  550 ccctaccaactgagttaagctcacgaggac 579  Q
    ||||||||||||||||||||||||||||||    
T  13017113 ccctaccaactgagttaagctcacgaggac 13017084  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 582
Target Start/End: Complemental strand, 46552015 - 46551986
Alignment:
Q  553 taccaactgagttaagctcacgaggaccta 582  Q
    ||||||||||||||||||||||||||||||    
T  46552015 taccaactgagttaagctcacgaggaccta 46551986  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 503 - 576
Target Start/End: Original strand, 32524418 - 32524484
Alignment:
Q  503 tggggtttgtaacttggactttgcatatattatgcattgtctctactccctaccaactgagttaagctcacgag 576  Q
    ||||||||| | | |||||||||||||||||||||||||       |||||||||| |||||||||||||||||    
T  32524418 tggggtttgaaccctggactttgcatatattatgcattg-------tccctaccaattgagttaagctcacgag 32524484  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 489 - 543
Target Start/End: Complemental strand, 404240 - 404186
Alignment:
Q  489 tttttggtcgtgtctggggtttgtaacttggactttgcatatattatgcattgtc 543  Q
    |||||||| |||||||||||| | | || |||| |||||||||||||||||||||    
T  404240 tttttggtggtgtctggggttcgaacctcggacattgcatatattatgcattgtc 404186  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 578
Target Start/End: Original strand, 28237295 - 28237324
Alignment:
Q  549 tccctaccaactgagttaagctcacgagga 578  Q
    ||||||||||||||||||||||||||||||    
T  28237295 tccctaccaactgagttaagctcacgagga 28237324  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 580
Target Start/End: Original strand, 7464528 - 7464559
Alignment:
Q  549 tccctaccaactgagttaagctcacgaggacc 580  Q
    ||||||||||||||||||||||||||||||||    
T  7464528 tccctaccaactgagttaagctcacgaggacc 7464559  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 549 - 579
Target Start/End: Complemental strand, 7738693 - 7738663
Alignment:
Q  549 tccctaccaactgagttaagctcacgaggac 579  Q
    |||||||||||||||||||||||||||||||    
T  7738693 tccctaccaactgagttaagctcacgaggac 7738663  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 549 - 579
Target Start/End: Complemental strand, 18554753 - 18554723
Alignment:
Q  549 tccctaccaactgagttaagctcacgaggac 579  Q
    |||||||||||||||||||||||||||||||    
T  18554753 tccctaccaactgagttaagctcacgaggac 18554723  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 586
Target Start/End: Original strand, 28244145 - 28244178
Alignment:
Q  553 taccaactgagttaagctcacgaggacctaaact 586  Q
    |||||||||||||||||||||||||||| |||||    
T  28244145 taccaactgagttaagctcacgaggaccaaaact 28244178  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 578
Target Start/End: Complemental strand, 50659617 - 50659588
Alignment:
Q  549 tccctaccaactgagttaagctcacgagga 578  Q
    ||||||||||||||||||||||||||||||    
T  50659617 tccctaccaactgagttaagctcacgagga 50659588  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 543
Target Start/End: Complemental strand, 5907877 - 5907822
Alignment:
Q  488 ttttttggtcgtgtctggggtttgtaacttggactttgcatatattatgcattgtc 543  Q
    ||||||||| ||||| |||||||| | | ||||| |||||||||||||||||||||    
T  5907877 ttttttggtggtgtccggggtttgaaccctggaccttgcatatattatgcattgtc 5907822  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 584
Target Start/End: Original strand, 30678850 - 30678885
Alignment:
Q  549 tccctaccaactgagttaagctcacgaggacctaaa 584  Q
    ||||||||||||||||||||||||||||||| ||||    
T  30678850 tccctaccaactgagttaagctcacgaggacataaa 30678885  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 548
Target Start/End: Complemental strand, 32864340 - 32864310
Alignment:
Q  518 ggactttgcatatattatgcattgtctctac 548  Q
    |||||||||||||||||||||||||||||||    
T  32864340 ggactttgcatatattatgcattgtctctac 32864310  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 549 - 579
Target Start/End: Complemental strand, 37014012 - 37013982
Alignment:
Q  549 tccctaccaactgagttaagctcacgaggac 579  Q
    |||||||||||||||||||||||||||||||    
T  37014012 tccctaccaactgagttaagctcacgaggac 37013982  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 578
Target Start/End: Original strand, 47478891 - 47478920
Alignment:
Q  549 tccctaccaactgagttaagctcacgagga 578  Q
    ||||||||||||||||||||||||||||||    
T  47478891 tccctaccaactgagttaagctcacgagga 47478920  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 549 - 579
Target Start/End: Original strand, 20043229 - 20043259
Alignment:
Q  549 tccctaccaactgagttaagctcacgaggac 579  Q
    |||||||||||||||||||||||||||||||    
T  20043229 tccctaccaactgagttaagctcacgaggac 20043259  T

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Target: scaffold0038 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 578
Target Start/End: Original strand, 37457 - 37486
Alignment:
Q  549 tccctaccaactgagttaagctcacgagga 578  Q
    ||||||||||||||||||||||||||||||    
T  37457 tccctaccaactgagttaagctcacgagga 37486  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 548
Target Start/End: Original strand, 38784070 - 38784115
Alignment:
Q  503 tggggtttgtaacttggactttgcatatattatgcattgtctctac 548  Q
    ||||||||| |  |||||||||||||||||||||||||||| ||||    
T  38784070 tggggtttgaactttggactttgcatatattatgcattgtccctac 38784115  T

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