View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_high_12 (Length: 384)
Name: NF17901_high_12
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 26 - 368
Target Start/End: Original strand, 51990788 - 51991131
Alignment:
| Q |
26 |
acaattatgatatatcagagtgtctctacacatattatttctacttgcagatcttacatcattttaccttatcaattttattgtactgctttgactttct |
125 |
Q |
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| T |
51990788 |
acaattctgatatatcagagtatctctacgcatattatttctacttgcagatcttacatcattttaccttatcaattttattgtactgctttgactttct |
51990887 |
T |
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| Q |
126 |
ttttgtagatttacaacatacgtttatttttgtacacaaaagaaacaaatataggtttacaa-gtaacaatcttaaccaccataacatttatttttctaa |
224 |
Q |
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| T |
51990888 |
ttttgtagatttacaacatacgtttatttttgtacacaaaagaaacaaatataggtttacaaagtaacaatcttaaccaccataacatttatttttctaa |
51990987 |
T |
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| Q |
225 |
acccaattagatttaattatactattttgaagcatctcaattgatgatctgatgttgcacatgtttgtgaatgggaaaactaagattagaatctaaaata |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51990988 |
acccaattagatttaattatactattttgaagcatctcaattgatgatctgatgttgcacatgtttgtgaatgggaaaactaagattagaatctaaaata |
51991087 |
T |
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| Q |
325 |
tggctacgtgaagattccaataagcaatttattgaatatcatgt |
368 |
Q |
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| T |
51991088 |
tggttacgtgaagattccaataagcaatttattgaatatcatgt |
51991131 |
T |
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