View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_high_2 (Length: 562)
Name: NF17901_high_2
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 7 - 547
Target Start/End: Original strand, 44645769 - 44646307
Alignment:
| Q |
7 |
aagaatataggtgatcagcacacaatgaatgaaataattagttagttaggctgaagatagagcaaagcagattgaataagaatttttcaataactcatat |
106 |
Q |
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| T |
44645769 |
aagaaaataggttaccagcacacaatgaatgaaataattagttggttaggctgaagatagagcaaagcagattgaataagaatttttcaataactcatat |
44645868 |
T |
|
| Q |
107 |
ggcttgaattctcttctcttacttgcatttagttaaaagtgacatatgcatataaatattgtgttagtgtaaacaaaagtctctttaatacattttagat |
206 |
Q |
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| T |
44645869 |
ggcttgaattctcttctcttacttgcatttagttaaaagtgacatatgcatataaatattgtgttagtgtaaacaaaagtctctttaatacattttagat |
44645968 |
T |
|
| Q |
207 |
atttaggtttatgttaaatagtcttnnnnnnnnnnnggacattaaaattttacaatagtttcttatgacaaattaagcctatggctaactaggcaattaa |
306 |
Q |
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| T |
44645969 |
atttaggtttatgttaaatagtcttaaaaaaaaa--ggacattaaaattttacaatagtttcttatgacaaattaagcctatggctaactaggcaattaa |
44646066 |
T |
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| Q |
307 |
gctcctgtcccttataagttaaatgacaaattagaagttagaaatcaatgtacaaaaagaagaacttaattaatttaaattaaaggttatttaaagtatt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44646067 |
gctcctgtcccttataagttaaatgacaaattagaagttagaaatcaatgtacaaaaagaagaacttaattaatttaaattaaaggttatttaaagtatt |
44646166 |
T |
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| Q |
407 |
ccaaggctttagtcttacttaattaaaattgcttaatattcattcattagcatggttgaataattaaaattgctatatatctatcgtatctacctgatca |
506 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44646167 |
ccaaggctttagccttacttaattaaaattgcttaatattcattcattagcatggttgaataattaaaattgctatatatctatcgtatctacctgatca |
44646266 |
T |
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| Q |
507 |
tatggagaacaactcatggttcatacaacaaacaatgaatt |
547 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
44646267 |
tatggagaacaactcatggttcatacaacaaacaatgaatt |
44646307 |
T |
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