View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17901_high_29 (Length: 285)
Name: NF17901_high_29
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_high_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 225483 - 225238
Alignment:
| Q |
23 |
tctcattttctaatttcaaatatcctaagtgtgttttctttcgcaacataaaccgctcacacgtcacgccacatacgagttcattattctttgtttataa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
225483 |
tctcattttctaatttcaaatatcctaagtgtgttttctttcgcaacataaaccgctcacacgtcacgccacatacgagttcattattctttgtttataa |
225384 |
T |
|
| Q |
123 |
tgtgaattggtgatctgaatgtgtgaagcattgacacttatcacttattgaattgcaggcagaaaaagaagttagggaatccaaacattttaagaaggcc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |
|
|
| T |
225383 |
tgtgaattggtgatctgaatgtgtgaagtgttgacacttatcacttattgaattgcaggcagagatggaaattagggaatccaaacattttaagaaggcc |
225284 |
T |
|
| Q |
223 |
atacttccctcacccattcatgacaaagaaattgtaaaattcacta |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
225283 |
atacttccctcacccattcatgacaaagaaattgtaaaattcacta |
225238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 58 - 264
Target Start/End: Complemental strand, 210953 - 210747
Alignment:
| Q |
58 |
ttctttcgcaacataaaccgctcacacgtcacgccacatacgagttcattattctttgtttataatgtgaattggtgatctgaatgtgtgaagcattgac |
157 |
Q |
| |
|
||||| |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| |||||||||| ||||| || || |
|
|
| T |
210953 |
ttcttccgcaacatgaaccactcacacgtcacgccacatacaagttcattattctttgtttgtaatgcgaattggtgttctgaatgtgagaagcgttaac |
210854 |
T |
|
| Q |
158 |
acttatcacttattgaattgcaggcagaaaaagaagttagggaatccaaacattttaagaaggccatacttccctcacccattcatgacaaagaaattgt |
257 |
Q |
| |
|
||||||||||||||||||||||||| || || |||||||||||||||| ||||||||| || || |||||||||||||||||| |||||||||||||||| |
|
|
| T |
210853 |
acttatcacttattgaattgcaggcggagaaggaagttagggaatccatacattttaaaaaagctatacttccctcacccatttatgacaaagaaattgt |
210754 |
T |
|
| Q |
258 |
aaaattc |
264 |
Q |
| |
|
||||||| |
|
|
| T |
210753 |
aaaattc |
210747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 197668 - 197599
Alignment:
| Q |
182 |
cagaaaaagaagttagggaatccaaacattttaagaaggccatacttccctcacccattcatgacaaaga |
251 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
197668 |
cagaaaaggaagtaagggaatccaaacatttcaagaaggccatacttccctcgcccattcatgacaaaga |
197599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 204300 - 204369
Alignment:
| Q |
182 |
cagaaaaagaagttagggaatccaaacattttaagaaggccatacttccctcacccattcatgacaaaga |
251 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||| || |||||||||||| ||||||||||||||||| |
|
|
| T |
204300 |
cagaaaaagaagtaagggaatccgaacattttaagatggacatacttccctcgcccattcatgacaaaga |
204369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 223602 - 223560
Alignment:
| Q |
205 |
aaacattttaagaaggccatacttccctcacccattcatgaca |
247 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||||||||| |
|
|
| T |
223602 |
aaacattttatgaaagccatccttccctcacccattcatgaca |
223560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 34122143 - 34122236
Alignment:
| Q |
56 |
ttttctttcgcaacataaaccgctcacacgtcacgccacatacgagttcattattctttgtttataatgtgaattggtgatctgaatgtgtgaa |
149 |
Q |
| |
|
||||||||| |||||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
34122143 |
ttttctttcacaacatgaacctctcacacgtcatgccacatacaagttcattattctttgtttataacatgaatcagtgatctgaatgtgtgaa |
34122236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 29839354 - 29839309
Alignment:
| Q |
198 |
ggaatccaaacattttaagaaggccatacttccctcacccattcat |
243 |
Q |
| |
|
|||||| |||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
29839354 |
ggaatcaaaacattttatgaaagccatacttccctcacccattcat |
29839309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 6904190 - 6904121
Alignment:
| Q |
182 |
cagaaaaagaagttagggaatccaaacattttaagaaggccatacttccctcacccattcatgacaaaga |
251 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
6904190 |
cagaaaaagaagtaagggaatccgaacattttaagatggccatacttccctcgcccattcatgacaaaga |
6904121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University