View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17901_high_36 (Length: 273)

Name: NF17901_high_36
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17901_high_36
NF17901_high_36
[»] chr5 (1 HSPs)
chr5 (128-256)||(7471428-7471556)
[»] chr1 (5 HSPs)
chr1 (147-209)||(23802618-23802680)
chr1 (153-225)||(6886582-6886654)
chr1 (169-227)||(4524595-4524653)
chr1 (155-197)||(5346067-5346109)
chr1 (161-209)||(25071642-25071690)
[»] chr3 (3 HSPs)
chr3 (152-231)||(47190179-47190258)
chr3 (154-218)||(26609797-26609861)
chr3 (163-204)||(8167458-8167499)
[»] chr2 (6 HSPs)
chr2 (157-209)||(11814076-11814128)
chr2 (151-209)||(1001372-1001430)
chr2 (155-209)||(14433831-14433885)
chr2 (153-209)||(16389465-16389521)
chr2 (170-209)||(32484078-32484117)
chr2 (168-209)||(8686913-8686954)
[»] chr4 (5 HSPs)
chr4 (153-209)||(12141790-12141846)
chr4 (154-196)||(2113442-2113484)
chr4 (152-208)||(43698762-43698816)
chr4 (156-209)||(45036781-45036834)
chr4 (161-209)||(789797-789845)
[»] chr7 (1 HSPs)
chr7 (153-226)||(31311970-31312042)
[»] chr6 (2 HSPs)
chr6 (159-208)||(22712221-22712270)
chr6 (151-199)||(22719336-22719384)


Alignment Details
Target: chr5 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 7471428 - 7471556
Alignment:
Q  128 gggttacaagatttaaaagtagtagcctgtctcccgagaggtcatttggttgagagtttctttcttcaacctcgagaaactctctttgaatcccgacacc 227  Q
    |||||||||||||||||  |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7471428 gggttacaagatttaaacttagtggcctgtctcccaagaggtcacttggttgagagtttctttcttcaacctcgagaaactctctttgaatcccgacacc 7471527  T
Q  228 agagatttgaactcagtgtcccttgggat 256  Q
    |||||||||||||||||||||||||||||    
T  7471528 agagatttgaactcagtgtcccttgggat 7471556  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 23802680 - 23802618
Alignment:
Q  147 tagtagcctgtctcccgagaggtcatttggttgagagtttctttcttcaacctcgagaaactc 209  Q
    |||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||    
T  23802680 tagtagcctgtctcccgagaagtcacttggttgagagtttctctcttcaacctcgagaaactc 23802618  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 6886582 - 6886654
Alignment:
Q  153 cctgtctcccgagaggtcatttggttgagagtttctttcttcaacctcgagaaactctctttgaatcccgaca 225  Q
    |||||||||||||   ||| |||||||| ||||||| ||||||||||||||||||||  |||||| |||||||    
T  6886582 cctgtctcccgaggtatcacttggttgaaagtttctctcttcaacctcgagaaactcggtttgaaacccgaca 6886654  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 4524595 - 4524653
Alignment:
Q  169 tcatttggttgagagtttctttcttcaacctcgagaaactctctttgaatcccgacacc 227  Q
    |||||||||||||||||||| ||||||||||  ||||||||  || ||| |||||||||    
T  4524595 tcatttggttgagagtttctctcttcaaccttaagaaactcggttcgaaacccgacacc 4524653  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 5346109 - 5346067
Alignment:
Q  155 tgtctcccgagaggtcatttggttgagagtttctttcttcaac 197  Q
    |||||||||||| |||| |||||||||||||||| ||||||||    
T  5346109 tgtctcccgagaagtcacttggttgagagtttctctcttcaac 5346067  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 25071642 - 25071690
Alignment:
Q  161 ccgagaggtcatttggttgagagtttctttcttcaacctcgagaaactc 209  Q
    |||||| ||||||||||||||||||||| | ||||| ||| ||||||||    
T  25071642 ccgagaagtcatttggttgagagtttctcttttcaatctcaagaaactc 25071690  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 47190179 - 47190258
Alignment:
Q  152 gcctgtctcccgagaggtcatttggttgagagtttctttcttcaacctcgagaaactctctttgaatcccgacaccagag 231  Q
    |||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||  ||  ||||||| ||||||||    
T  47190179 gcctgtcttccaagaggtcatttggttgagagtttctctcttcaacctcgagaaactcggttcaaatcccggcaccagag 47190258  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 26609797 - 26609861
Alignment:
Q  154 ctgtctcccgagaggtcatttggttgagagtttctttcttcaacctcgagaaactctctttgaat 218  Q
    ||||||||||||| |||| | |||||||||||||| ||||||| || |||||||||  |||||||    
T  26609797 ctgtctcccgagaagtcactaggttgagagtttctctcttcaatcttgagaaactcggtttgaat 26609861  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 8167458 - 8167499
Alignment:
Q  163 gagaggtcatttggttgagagtttctttcttcaacctcgaga 204  Q
    ||||||||| ||||||||||| |||| |||||||||||||||    
T  8167458 gagaggtcacttggttgagagattctctcttcaacctcgaga 8167499  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 11814128 - 11814076
Alignment:
Q  157 tctcccgagaggtcatttggttgagagtttctttcttcaacctcgagaaactc 209  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11814128 tctcacgagaggtcatttggttgagagtttctctcttcaacctcgagaaactc 11814076  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 1001372 - 1001430
Alignment:
Q  151 agcctgtctcccgagaggtcatttggttgagagtttctttcttcaacctcgagaaactc 209  Q
    ||||||||| |||| |||||| |||||||||| ||||| ||||||||||||||||||||    
T  1001372 agcctgtcttccgaaaggtcacttggttgagaatttctctcttcaacctcgagaaactc 1001430  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 14433831 - 14433885
Alignment:
Q  155 tgtctcccgagaggtcatttggttgagagtttctttcttcaacctcgagaaactc 209  Q
    ||||||| |||| |||| |||||||||||||||| ||||||||||||||||||||    
T  14433831 tgtctcctgagaagtcacttggttgagagtttctctcttcaacctcgagaaactc 14433885  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 16389465 - 16389521
Alignment:
Q  153 cctgtctcccgagaggtcatttggttgagagtttctttcttcaacctcgagaaactc 209  Q
    |||||||||||||| |||| |||||||| ||||||| ||||||||| ||||||||||    
T  16389465 cctgtctcccgagaagtcacttggttgatagtttctctcttcaaccccgagaaactc 16389521  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 32484117 - 32484078
Alignment:
Q  170 catttggttgagagtttctttcttcaacctcgagaaactc 209  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  32484117 catttggttgagagtttctctcttcaacctcgagaaactc 32484078  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 8686954 - 8686913
Alignment:
Q  168 gtcatttggttgagagtttctttcttcaacctcgagaaactc 209  Q
    |||| |||||||||||||||| |||||| |||||||||||||    
T  8686954 gtcacttggttgagagtttctctcttcatcctcgagaaactc 8686913  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 12141846 - 12141790
Alignment:
Q  153 cctgtctcccgagaggtcatttggttgagagtttctttcttcaacctcgagaaactc 209  Q
    |||||||||||||| || | |||||||||||| ||| ||||||||||||||||||||    
T  12141846 cctgtctcccgagaagttacttggttgagagtatctctcttcaacctcgagaaactc 12141790  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 2113484 - 2113442
Alignment:
Q  154 ctgtctcccgagaggtcatttggttgagagtttctttcttcaa 196  Q
    ||||||||||||| |||||||||| |||||||||| |||||||    
T  2113484 ctgtctcccgagaagtcatttggtagagagtttctatcttcaa 2113442  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 43698762 - 43698816
Alignment:
Q  152 gcctgtctcccgagaggtcatttggttgagagtttctttcttcaacctcgagaaact 208  Q
    ||||||||||||||| |||| ||||||||||  |||| ||||||||||| |||||||    
T  43698762 gcctgtctcccgagaagtcacttggttgaga--ttctctcttcaacctcaagaaact 43698816  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 45036834 - 45036781
Alignment:
Q  156 gtctcccgagaggtcatttggttgagagtttctttcttcaacctcgagaaactc 209  Q
    ||||||||||| ||||  ||||||||||||||| |||||||||| | |||||||    
T  45036834 gtctcccgagaagtcacatggttgagagtttctctcttcaaccttgtgaaactc 45036781  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 789845 - 789797
Alignment:
Q  161 ccgagaggtcatttggttgagagtttctttcttcaacctcgagaaactc 209  Q
    |||||| ||||||||||||||||||||| | ||||| ||| ||||||||    
T  789845 ccgagaagtcatttggttgagagtttctcttttcaatctcaagaaactc 789797  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 31311970 - 31312042
Alignment:
Q  153 cctgtctcccgagaggtcatttggttgagagtttctttcttcaacctcgagaaactctctttgaatcccgacac 226  Q
    |||||||| |||||| |||  ||||||||||||||| ||||||||||||||| ||||  |||||  ||||||||    
T  31311970 cctgtctctcgagag-tcacatggttgagagtttctctcttcaacctcgagagactcggtttgagacccgacac 31312042  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 22712270 - 22712221
Alignment:
Q  159 tcccgagaggtcatttggttgagagtttctttcttcaacctcgagaaact 208  Q
    |||||||| ||||||||||| ||||| ||| ||||||| |||||||||||    
T  22712270 tcccgagaagtcatttggttcagagtatctctcttcaaactcgagaaact 22712221  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 22719336 - 22719384
Alignment:
Q  151 agcctgtctcccgagaggtcatttggttgagagtttctttcttcaacct 199  Q
    ||||| |||||||||| |||| |||||||||||||||| | ||||||||    
T  22719336 agcctctctcccgagaagtcacttggttgagagtttctcttttcaacct 22719384  T

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