View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_high_44 (Length: 249)
Name: NF17901_high_44
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 40967559 - 40967321
Alignment:
| Q |
1 |
agcatttctgtttttaactataaggtaaaaagtcctttaaccgtcgcaaaaaaggtttgcactcagaatctgtgataaattaggcaccaacccgatgcag |
100 |
Q |
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| T |
40967559 |
agcatttctgtttttaactataaggtaaaaagtcctttaaccgtcgcaaaaaaggtttgcactcagaatctgtgataaattaggcaccaacccggtgcag |
40967460 |
T |
|
| Q |
101 |
cacttcagaacctgtgatataattttaaaatctcaggactttttcttacttcttaaggagggaaggtgccacaggacaatagtcggtttctttccatatg |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40967459 |
cacttcggaacctgtgatataattttaaaatctcaggactttttcttacttcttaaggagggaaggtgccacaggacaatagtcggtttctttccatatg |
40967360 |
T |
|
| Q |
201 |
cccaacagaacttaaattacacgataaaagcttcttcat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
40967359 |
cccaacagaacttaaattacacgataaaagcttcttcat |
40967321 |
T |
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