View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_high_45 (Length: 247)
Name: NF17901_high_45
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 34641214 - 34641440
Alignment:
| Q |
1 |
ttattaataatggtaatagcgacattatatgaattttctttcgactaaattcgatatgaattttaaactccgttttattgaagttataaagtcaaactct |
100 |
Q |
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| T |
34641214 |
ttattaataatggtaatagcg------tatgaattttcttttaattaaattcaatatgaattttaaactccgttttgttgaagttataaagtcaaactct |
34641307 |
T |
|
| Q |
101 |
tacgactgggctcacctggtatgggtgtcatggaaaaaat-gtattacataacaattgaacatgcaaaggaaaaaagaattagaaattaagtacctataa |
199 |
Q |
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|||||||| ||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34641308 |
tacgactgagctcatctcgtatgggtgtcatggaaaaaattgtattacataacaattgaacatgcaaaggaaaaaagaattagaaattaagtacctataa |
34641407 |
T |
|
| Q |
200 |
aatcagtgccaagtttcccatttgagaaccttc |
232 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34641408 |
aatcagtgccaagtttcccatttgagaaccttc |
34641440 |
T |
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