View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_high_46 (Length: 247)
Name: NF17901_high_46
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_high_46 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 49410387 - 49410155
Alignment:
| Q |
1 |
atagaccaagatatggtgatgatgatgatgataacggtggatggagacggcgtgatccgtttttgtttgcaaggaaattttcagctgagtgtttacaact |
100 |
Q |
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| T |
49410387 |
atagaccaagatatggtgatgatgatgat---aacggtggatggagacggcgtgatccgtttttgtttgcaaggaaattttcagctgagtgtttacaact |
49410291 |
T |
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| Q |
101 |
gttgacggagatagctgatggcgtgatatttaaggactagagagtagcaatctcaatggcggctttctagtgttttaggttggagaaccattggagaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49410290 |
gttgacggagatagctgatggcgtgatatttaaggactagagagtagcaatctcaatggcggctttctagtgttttaggttggagaaccattggagaggt |
49410191 |
T |
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| Q |
201 |
ttggcaataatactaaaaagggaattagactcctatg |
237 |
Q |
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||||||||||| |||||||||||||||||| |||||| |
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| T |
49410190 |
ttggcaataat-ctaaaaagggaattagacccctatg |
49410155 |
T |
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