View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_high_52 (Length: 238)
Name: NF17901_high_52
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40967644 - 40967864
Alignment:
| Q |
1 |
ccccctgacgcaattatttcatttttgcataacctgctgctgaactgaaattgctattatatacattggatgtatggttaatttttgaattctgattgcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40967644 |
ccccctgacgcaattatttcatttttgcataacctgctgctgaactgaaattgctat-atatacattggatgtatggttaatttttgaattctgattgcc |
40967742 |
T |
|
| Q |
101 |
atgtacaatagatctggatctcccaccatggaagatattgaagccttttctacagcttacagagcaaaattggatgaagcagaacttgccaaattcgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40967743 |
atgtacaatagatctggatctcccaccatggaagatattgaagccttttctacagcttacagagcaaaattggatgaagcagaacttgccaaattcgttc |
40967842 |
T |
|
| Q |
201 |
ctgagaatttaagtttggaggt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
40967843 |
ctgagaatttaagtttggaggt |
40967864 |
T |
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