View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17901_high_59 (Length: 216)
Name: NF17901_high_59
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_high_59 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 5162056 - 5162245
Alignment:
| Q |
13 |
cacagacaccatgttgacaaaagcacaagcaaatgtagcagaagtgtattgaatccccaagaggaagaagtattgtgtgactgaagctctataaagaaag |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5162056 |
cacaggcaccatgttgacaaaagcacaagcaaatgtagcagaagtgtattgaatccccaagaggaagaagtattgtgtgactgaagctctataaagaaag |
5162155 |
T |
|
| Q |
113 |
tatacagtaagtatttcactacaaccatggctatattggaagtaaataagaaacagtgctagggagatagatgtaacatagtaaaatgtg |
202 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5162156 |
tatacaataagtatctcactacaaccatggctatattggaagtaaataagaaaaagtgctagggagatagatgtaacatagtaaaatgtg |
5162245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University