View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17901_low_1 (Length: 827)
Name: NF17901_low_1
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 459 - 810
Target Start/End: Complemental strand, 32266822 - 32266469
Alignment:
| Q |
459 |
tttgtgttgctgctacaacaatgaatctaaggaaatctaagagaagaattaggttcaagtctattactctttcaaatcatcaaccttcttcttcttctgt |
558 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32266822 |
tttgtgttgctgctacaacaatgaatctaaggaaatctaagagaagaattaggttcaagtctattactctttcaaatcagcaaccttcttcttcttctgt |
32266723 |
T |
|
| Q |
559 |
taatggcggttcttcatctgtttctgagatggaacaggaacaacaagaagaggttgctagatgtttgatgttgttgtctagag--annnnnnnggtcata |
656 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32266722 |
taatggtggttcttcatctgtttctgagatggaacaggaacaacaagaagaggttgctagatgtttgatgttgttgtctagagtattttttttggtcata |
32266623 |
T |
|
| Q |
657 |
agggtcgttttgtttctgaatcttctgataataacaatgagattgttttagagacgaaatcgaagattgttatcagaaatggtaacaaatttgtagctaa |
756 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32266622 |
agggtcgttttgtttctgaatcttctgataataacaatgagattgttctagagacgaaatccaagattgttatcagaaatggtaacaaatttgtagctaa |
32266523 |
T |
|
| Q |
757 |
taatgctcgtgaatttgttgcggagaagaaaaagaagctgaaaatggttgggat |
810 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32266522 |
tcatgctcgtgaatttgttgcggagaagaaaaagaagctgaaaatggttgggat |
32266469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 184 - 432
Target Start/End: Complemental strand, 32267100 - 32266852
Alignment:
| Q |
184 |
aaacctcatttatggtctaagagaaaatcccaagaaaacaatgaggtttgtgcattctcatcatcatcattataatcatcannnnnnnnnnnnnnnnnna |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32267100 |
aaacctcatttatggtctaagagaaaatcccaagaaaacaatgaggtttgtgcattctcatcatcatcattataatcatcatgctgctactgctgctgca |
32267001 |
T |
|
| Q |
284 |
accacattggaacaaaatgaaatgatcaaattctgcaaagaatgtgggaaaggttttccttcattgaaagcactttgtggacacatggcttctcattctg |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32267000 |
accacattggaacaaaatgaaatgatcaaattctgcaaagaatgtgggaaaggttttccttcattgaaagcactttgtggacacatggcttctcattctg |
32266901 |
T |
|
| Q |
384 |
agaaagagaaaaagatcaacaaggctatgatggaggaggatactcaatc |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32266900 |
agaaagagaaaaagatcaacaaggctatgatggaggaggatactcaatc |
32266852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 32267273 - 32267170
Alignment:
| Q |
8 |
gagaagcataggaagtttgtatgcaaatattgcttcaagaggtttccttgtgggaagtctcttggtggtcacatcagaacacacatgacagaagaaagaa |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32267273 |
gagaaacataggaagtttgtatgcaaatattgcttcaagaggtttccttgtgggaagtctcttggtggtcacatcagaacacacatgacagaagaaagaa |
32267174 |
T |
|
| Q |
108 |
ataa |
111 |
Q |
| |
|
|||| |
|
|
| T |
32267173 |
ataa |
32267170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 9e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 311 - 390
Target Start/End: Complemental strand, 19301476 - 19301397
Alignment:
| Q |
311 |
aaattctgcaaagaatgtgggaaaggttttccttcattgaaagcactttgtggacacatggcttctcattctgagaaaga |
390 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||| ||| ||||||||||| |
|
|
| T |
19301476 |
aaattctgcaaagaatgtggaaaaggttttccatcattgaaagcactgtgtggtcacatggcttgtcactctgagaaaga |
19301397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 19301560 - 19301508
Alignment:
| Q |
185 |
aacctcatttatggtctaagagaaaatcccaagaaaacaatgaggtttgtgca |
237 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||||||| ||||||||||| |
|
|
| T |
19301560 |
aaccttatttatggtcttagagagaatcccaagaaaacaactaggtttgtgca |
19301508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University