View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_low_11 (Length: 437)
Name: NF17901_low_11
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 65 - 423
Target Start/End: Original strand, 9124172 - 9124536
Alignment:
| Q |
65 |
tgtgaagattgttgaagaaggtgatgtatttataggaggtattgtgcaaaatactgattaatgttgttgttgctatacttgataatgttgttgttttggt |
164 |
Q |
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| T |
9124172 |
tgtgaagattgttgaagaaggtgatgtatttataggaggtattgtgcaaaatactgattaatgttgttgttgctatacttgataatgttgtcgttttggt |
9124271 |
T |
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| Q |
165 |
atgtttggat---tactgttcatagtcgttggtcaactggccaacatctttagtggtctttaatagtgatgtttctgcagc-tgttttagcttctcttac |
260 |
Q |
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| T |
9124272 |
atgtttggattactactgttcatagccgttggtcaactggtcaacatctttagtgatctttaacagtgatgcttctacagcttgtttttgcttctcttac |
9124371 |
T |
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| Q |
261 |
atgttggccactgagggaacatgtaatgacaaaaattaccatttatgagataaatttgcatggttagaatatgagagtggtcccaataa--tttttctga |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| || |
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| T |
9124372 |
ctgttggccactgagggaacatgtaatgacaaaaattaccatttatgagataaatttgcatggttagaatacgagagtagtcccaataatttttttttgg |
9124471 |
T |
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| Q |
359 |
aaaattcgttggtatttttgttctacctattgtatccgtgttgtgtgcgcgtcatgtagtatgtg |
423 |
Q |
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| T |
9124472 |
aaaattcgttggtatttttgttctacctattgtgtccgtgttgtgtgtgcgtcttatagtatgtg |
9124536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 262 - 416
Target Start/End: Complemental strand, 23165225 - 23165072
Alignment:
| Q |
262 |
tgttggccactgagggaacatgtaatgacaaaaattaccatttatgagataaatttgcatggttagaatatgagagtggtcccaataattttt-ctgaaa |
360 |
Q |
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| T |
23165225 |
tgttcgccattgagggaacatgtaatgataaaaattgtcatttat-agataaatttgcatggttggaatatgagagtggtctcaagaatttttggtggaa |
23165127 |
T |
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| Q |
361 |
aattcgttggtatttttgttctacctattgtatccgtgttgtgtgcgcgtcatgta |
416 |
Q |
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| T |
23165126 |
aattcgttggtatttttgttc-acctattgtcttcgcgtcgtgtgcacgtcatgta |
23165072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 285 - 423
Target Start/End: Complemental strand, 10758812 - 10758675
Alignment:
| Q |
285 |
aatgacaaaaattaccatttatgagataaatttgcatggttagaatatgagagtggtcccaataattttt-ctgaaaaattcgttggtatttttgttcta |
383 |
Q |
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|||||||||||||||||||||||||||| ||| |||| ||| ||||||||| ||||||| ||||||||| || |||||||| |||||||||||||||| |
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| T |
10758812 |
aatgacaaaaattaccatttatgagatacattggcattgttggaatatgag--tggtcccgataattttttctagaaaattcgctggtatttttgttcta |
10758715 |
T |
|
| Q |
384 |
cctattgtatccgtgttgtgtgcgcgtcatgtagtatgtg |
423 |
Q |
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| T |
10758714 |
cctattgcgttcgtgttgtgcgcgcgtcaagtagtatgtg |
10758675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 276 - 423
Target Start/End: Complemental strand, 7964279 - 7964131
Alignment:
| Q |
276 |
ggaacatgtaatgacaaaaattaccatttatg-agataaatttgcatggttagaatatgagagtggtcccaataatttttc-tgaaaaattcgttggtat |
373 |
Q |
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|||| ||||||||||||||||||| |||| | |||||||||||||||||| ||||||||||| ||||||| |||||| || ||||||||||||| | |
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| T |
7964279 |
ggaaaatgtaatgacaaaaattacaattttagtagataaatttgcatggttgcaatatgagagtagtcccaagaattttcggtggaaaattcgttggtgt |
7964180 |
T |
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| Q |
374 |
ttttgttctacctattgtatccgtgttgtgtgcgcgtcatgtagtatgtg |
423 |
Q |
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||| ||| | | |||||| |||||||||||||| |||||||||||||||| |
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| T |
7964179 |
ttt-gttatgcatattgtgtccgtgttgtgtgcacgtcatgtagtatgtg |
7964131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 10758902 - 10758840
Alignment:
| Q |
71 |
gattgttgaagaaggtgatgtatttataggaggtattgtgcaaaatactgattaatgttgttg |
133 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||| |
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| T |
10758902 |
gattgttgaagaaggtgatgtatttataagaggtattgtgcaaagtcctgattaatgttgttg |
10758840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 353
Target Start/End: Complemental strand, 7961742 - 7961661
Alignment:
| Q |
273 |
gagggaacatgtaatgacaaaaattaccatttatg-agataaatttgcatggttagaatatgagagtggtcccaataatttt |
353 |
Q |
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| T |
7961742 |
gagggaaaatgtaatgacaaaaattacaattttagtagataaatttgcatggttgcaatatgagagtagtccctaaaatttt |
7961661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 18062071 - 18062002
Alignment:
| Q |
44 |
tggtaaatcatgtttgaatgatgtgaagattgttgaagaaggtgatgtatttataggaggtattgtgcaa |
113 |
Q |
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|||||||| | |||||| | ||||| ||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
18062071 |
tggtaaattaagtttgatttctgtgaggattgttgaagaaagtgatgtatttataggaggtattgggcaa |
18062002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 19660649 - 19660613
Alignment:
| Q |
72 |
attgttgaagaaggtgatgtatttataggaggtattg |
108 |
Q |
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| T |
19660649 |
attgttgaagaaggtgatgtatttataagaggtattg |
19660613 |
T |
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