View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_low_12 (Length: 425)
Name: NF17901_low_12
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Complemental strand, 10417218 - 10416820
Alignment:
| Q |
16 |
gtttccataagctaaaaacagttttgcaagtacttaaaccagtatataagctcaaatgcagagtttgaatgcacctaaaaatagctcgagggacagaagc |
115 |
Q |
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| T |
10417218 |
gtttccataagctaaaaacagttttgcaagtacttaaaccagtatataagctcaaatgcagagtctgaatgcacctaaaaatagctcgagggacagaggc |
10417119 |
T |
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| Q |
116 |
ataattaatactactctaataatgcatgtaaagtttgaactatcataattttatgataatttttaccctcttaatcttacctcatgattgaaaggttcca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10417118 |
ataattaatactactctaataatgcatgtaaagtttgaactatcataattttatgataatttttaccctcttaatcttacctcatgaatgaaaggttcca |
10417019 |
T |
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| Q |
216 |
ttcaaaataaaaatggattagaggtttgactttacaccnnnnnnnnnnnngaatgaaaggttgactaattaatggtttaagttagccttctaccaaatct |
315 |
Q |
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||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10417018 |
ttcaaaataaaaatgtattagaagtttgactttacaccaaaaataaaaaagaatgaaaggttgactaattaatggtttaagttagccttctaccaaatct |
10416919 |
T |
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| Q |
316 |
acttaatcaaataaaggtcatcataattattgataaactgcttctgcctttgcaaccaaataccattgtttaatttgtaataataattcctttaccttt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10416918 |
acttaatcaaataaaggtcatcataattattgataaactgcttcttcctttgcaaccaaataccattgtttaatttgtaataataattcctttaccttt |
10416820 |
T |
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