View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_low_13 (Length: 404)
Name: NF17901_low_13
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 386
Target Start/End: Complemental strand, 45280957 - 45280584
Alignment:
| Q |
11 |
cacagatcagatctcgcattacgtagtgattgaatttgaaacatcaccattttttcaatagtttttaaccatatatattgctttaaatttaaggcaagtt |
110 |
Q |
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| T |
45280957 |
cacagatcagatctcgcattacgtagtgattgaatttgaaacatcaccattttttcaatagtttttaaccatatat--tgctttaaatttaaggcaagtt |
45280860 |
T |
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| Q |
111 |
atacaactaaccataagtacatcacattaaatcattaaaggttacctaacaatcgccctagatccaaaagatgtagtataccacacaccatttgtggaga |
210 |
Q |
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| T |
45280859 |
atacaactaaccataagtacatcacattaaatcattaaaggttacctaacaatcgccctagatccaaaagatgtagtataccacacaccatttgtggaaa |
45280760 |
T |
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| Q |
211 |
ttggtctgtatatgccattttttcatcatgatgaataagtgttctgttctgccattttagactcaaaatccaaatcaacgtgagaaattatatccttcca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45280759 |
ttggtctgtatatgccattttttcatcatgatgaataagtgttctgttctgccattttagactcaaaatccaaatcaacgtgagaaattatatccttcca |
45280660 |
T |
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| Q |
311 |
tgtacagtgtcactttctagtttccatttattgtttaatttttgttggagtttatatttgaaagacttcaccatgc |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45280659 |
tgtacagtgtcactttctagtttccatttattgtttaatttttgttggagtttatatttgaaagtcttcaccatgc |
45280584 |
T |
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