View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_low_14 (Length: 385)
Name: NF17901_low_14
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 47072466 - 47072109
Alignment:
| Q |
19 |
tagatattaagtggtacattttatttgtgttggatgcggacgaaattttaggtcgcaaatgcannnnnnncattcaaatgaactgtaaattgaagcatga |
118 |
Q |
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| T |
47072466 |
tagatattaagtggtacattttatttgtgttggatgcggacgaaattttaggtcgcaaatgc-gttttttcattcaaatgaactgtaaattgaagcatga |
47072368 |
T |
|
| Q |
119 |
atctctgccatatgtagcatcttgattatgaaagttagatagtagtagtttatgctctttctatttcatgttagttagcttttagtttacattatgttat |
218 |
Q |
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| T |
47072367 |
atctctgccatatgtagcatcttgattatgaaagttagatagtagtagtttatgctctttctatttcatgttagttagcttttagtttacattatgttat |
47072268 |
T |
|
| Q |
219 |
ttgattcagtttccagttcatcttcctttcttccaaaatgtatataattgatgtacccagtaccattaattattgaaagtaagaatccaatgcttcatat |
318 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47072267 |
ttgattcagtttcaagttgatcttcctttcttccaaaatgtatataattgatgtacccagtaccattaattattgaaagtaagaatccattgcttcatat |
47072168 |
T |
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| Q |
319 |
tcataatagggtatcagttacaaataattctacttctaccaccttcatctgttcatctc |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47072167 |
tcataatagggtatcagttacaaataattctacttctaccaccttcatctgttcttctc |
47072109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 33598542 - 33598227
Alignment:
| Q |
19 |
tagatattaagtggtacattttatttgtgttggatgcggacgaaattttaggtcgcaaatgcannnnnnncattcaaatgaactgtaaattgaagcatga |
118 |
Q |
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| T |
33598542 |
tagatattaagtggtacattttatttgtgttggatgcggacgaaattttaggtctcaaat--acgtttttcattcaaatgaactgtagattgaagcatga |
33598445 |
T |
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| Q |
119 |
atctctgccatatgtagcatcttgattatgaaagttagatagtagtagtttatgctctttctatttcatgttagttagcttttagtttacattatgttat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| |||||| |
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| T |
33598444 |
atctctgccatatgtagcatcttgattatgaaagttagatagtagtagtttatgccctttctatttcatgttaattaacttttagtttacattgtgttat |
33598345 |
T |
|
| Q |
219 |
ttgattcagtttccagttcatcttcctttcttccaaaatgtatataattgatgtacccagtaccattaattattgaaagtaagaatccaatgcttcatat |
318 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |
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| T |
33598344 |
ttgattcagtttcaagttgatcttcctttcttccaaaatgtatataattgatgtacccagtaccattcattattgaaagtaagaaagcgttgcttcatat |
33598245 |
T |
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| Q |
319 |
tcataatagggtatcagt |
336 |
Q |
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|||||||||||||||||| |
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| T |
33598244 |
tcataatagggtatcagt |
33598227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 89 - 230
Target Start/End: Original strand, 18232771 - 18232908
Alignment:
| Q |
89 |
cattcaaatgaactgt--aaattgaagcatgaatctctgccatatgtagcatcttgattatgaaagttagatagtagtagtttatgctctttctatttca |
186 |
Q |
| |
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|||||||||||||||| |||| ||| ||||||||||||| |||| |||||||||| || ||||||||||||||||||||||| ||||||||||| |
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| T |
18232771 |
cattcaaatgaactgtgtaaatagaaacatgaatctctgctatat------tcttgattataaatgttagatagtagtagtttatgctatttctatttca |
18232864 |
T |
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| Q |
187 |
tgttagttagcttttagtttacattatgttatttgattcagttt |
230 |
Q |
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|||| |||||||| ||||||||||| ||||| |||||||||||| |
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| T |
18232865 |
tgtttgttagcttctagtttacattgtgttacttgattcagttt |
18232908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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