View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_low_16 (Length: 383)
Name: NF17901_low_16
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 49410363 - 49410729
Alignment:
| Q |
1 |
tcatcatcaccatatcttggtctatctcttctcaaagaccaaattagttcaggacaaacttcatctgccacgtaagtccgaggatgtccatcgtctcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49410363 |
tcatcatcaccatatcttggtctatctcttctcaaagaccaaattagttcaggacaaacttcatctgccacgtaagtccgaggatgtccatcgtctcttc |
49410462 |
T |
|
| Q |
101 |
cttcccaatccacgtgtgtgagtgtagcatgcacacaacccttcgggtcccacatgttaataagggtagaaaagtaattctcctccggataacacgaatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49410463 |
cttcccaatccacgtgtgtgagtgtagcatgcacacaacccttcgggtcccacatgttaataagggtagaaaagtaattctcctccggataacacgagtc |
49410562 |
T |
|
| Q |
201 |
caaacgtatgcatggtttgttgaatttcgaccaaatttttctatcgctgacaactagtcttgcatgcttacgtgtcagcgcccaaaactgcgatccaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49410563 |
caaacgtatgcatggtttgttgaatttcgaccaaatttttctatcgctgacaactagtcttgcatgcttacgtgtcagcgcccaaaactgcgatccaatg |
49410662 |
T |
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| Q |
301 |
cggaaatcctcaatttttacagtggggagcattgcttgttctccacgcgccgcccagcggtcgtaag |
367 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49410663 |
cgaaaatcctcaatttttacagtggggagcattgcttgttctccacgcgccgcccagcggtcgtaag |
49410729 |
T |
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