View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_low_18 (Length: 359)
Name: NF17901_low_18
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 71 - 335
Target Start/End: Complemental strand, 12627309 - 12627045
Alignment:
| Q |
71 |
aaaaactgcagcatgagatgttttaactataatcaacaggagtttatttttctgctactaataacggcctatatatttgtttgttatgttgatgcttttg |
170 |
Q |
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| T |
12627309 |
aaaaactgcagcatgagatgttttaactataatcaacaggagtttatttttctgctactaataatggcctatatattagtttgttatgctgatgcttttg |
12627210 |
T |
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| Q |
171 |
tttgtataagactatgaagcatggacactcctctggttaagggtgtccttgggtgtcagacacgcgtcggtgtctccgatacaccgacaccaacacgaca |
270 |
Q |
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| T |
12627209 |
tttgtataagactatgaagcatggacactcctctggttaggggtgtccttgggtgtcagacatgcgtcggtgtctccgatacaccgacaccaaaacgaca |
12627110 |
T |
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| Q |
271 |
cctataactagaccgaatattatgccattttctcacattattatctgtgtccgtgtccgtgtcat |
335 |
Q |
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| T |
12627109 |
cctataactacaccgaatattatgccattttctcacattattatctgtgtcggtgtccgtgtcat |
12627045 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 335
Target Start/End: Original strand, 10230067 - 10230146
Alignment:
| Q |
254 |
ccgacaccaacacgacacctataactagaccgaatattatgccattttctcacattattatctgtgtccgtgtccgtgtcat |
335 |
Q |
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| T |
10230067 |
ccgacaccaacacgacatctatacttacactgaat--tatgtcatttcctcaaattattatctgagtcagtgtccgtgtcat |
10230146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 40747767 - 40747844
Alignment:
| Q |
254 |
ccgacaccaacacgacacctataactagaccgaatattatgccattttctcacattattatctgtgtccgtgtccgtgtc |
333 |
Q |
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|||||||||||| ||||||||||| || | || |||||| |||||||||| ||||||||| ||||| ||||| ||||| |
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| T |
40747767 |
ccgacaccaacatgacacctataattacattga--attatgtcattttctcaaattattatccgtgtcggtgtctgtgtc |
40747844 |
T |
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