View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_low_21 (Length: 344)
Name: NF17901_low_21
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 41546231 - 41546532
Alignment:
| Q |
1 |
ataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41546231 |
ataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgcca |
41546330 |
T |
|
| Q |
101 |
tctttgatgctgattttcaacctgagtctaactttctttaccgcaccattccattccttgatcaaaatccacaagttggactagttcaagctcgatggca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41546331 |
tctttgatgctgattttcaacctgagtctaactttctttaccgcaccattccattccttgatcaaaatccacaagttggactagttcaagctcgatggca |
41546430 |
T |
|
| Q |
201 |
attcggtaattttttagaccttcatgaaactcttaattat---taattgagattaatgttttatgcattggctgtgtaacatttttacacataaactcaa |
297 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| |
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| T |
41546431 |
attcggtaattttttagaccttcatgaaactcctaattattagtaattgagattaat-tgttatgcattgactgtgtaacatttttacacataaactcaa |
41546529 |
T |
|
| Q |
298 |
tca |
300 |
Q |
| |
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||| |
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| T |
41546530 |
tca |
41546532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 26832775 - 26832654
Alignment:
| Q |
1 |
ataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgcta |
100 |
Q |
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||||||||||| | ||||| |||||||||||||||||||| ||||| | || || |||||||| ||||||||||| |||| ||||| |||||||||| |
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| T |
26832775 |
ataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgcta |
26832676 |
T |
|
| Q |
101 |
tctttgatgctgattttcaacc |
122 |
Q |
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|||||||||||||||||||||| |
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| T |
26832675 |
tctttgatgctgattttcaacc |
26832654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 26786057 - 26785933
Alignment:
| Q |
1 |
ataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgcta |
100 |
Q |
| |
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||||||||||| | ||||| || |||||||| ||||||||||||||||| || || |||||||| ||||| ||||| || ||||| |||||||| | |
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| T |
26786057 |
ataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgcca |
26785958 |
T |
|
| Q |
101 |
tctttgatgctgattttcaacctga |
125 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
26785957 |
tctttgatgctgattttcaacctga |
26785933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 26791797 - 26791673
Alignment:
| Q |
1 |
ataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgcta |
100 |
Q |
| |
|
||||||||||| | ||||| || |||||||| ||||||||||||||||| || || |||||||| ||||| ||||| || ||||| |||||||| | |
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| T |
26791797 |
ataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgcca |
26791698 |
T |
|
| Q |
101 |
tctttgatgctgattttcaacctga |
125 |
Q |
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||||||||||||||||||||||||| |
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| T |
26791697 |
tctttgatgctgattttcaacctga |
26791673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 26822698 - 26822574
Alignment:
| Q |
1 |
ataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgcta |
100 |
Q |
| |
|
||||||||||| | ||||| || |||||||| ||||||||||||||||| || || |||||||| ||||| ||||| || ||||| |||||||| | |
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| T |
26822698 |
ataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgcca |
26822599 |
T |
|
| Q |
101 |
tctttgatgctgattttcaacctga |
125 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
26822598 |
tctttgatgctgattttcaacctga |
26822574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 41917455 - 41917576
Alignment:
| Q |
1 |
ataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgcta |
100 |
Q |
| |
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||||||||||| | ||||| ||||||||||| |||||||| || ||| | |||||||||||||||||||||||||| || | ||||| ||||||| | |
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| T |
41917455 |
ataaagtatgaagttagggacaatagaaatggatacaaagcaggggctttaaaagaaggaatgaagcatagctatgtgaagcaatgtgatcatgttgcaa |
41917554 |
T |
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| Q |
101 |
tctttgatgctgattttcaacc |
122 |
Q |
| |
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| |||||||||||||||||||| |
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| T |
41917555 |
tatttgatgctgattttcaacc |
41917576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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