View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_low_26 (Length: 330)
Name: NF17901_low_26
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 35970272 - 35970586
Alignment:
| Q |
18 |
aaacaaacattaagttgttactgaatctaccaaatgaaatgtgcatgacgttatagacacgacactccacattttttattgcgtctgtgggataaatagt |
117 |
Q |
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| T |
35970272 |
aaacaaacattaagttgttactgaatctaccaaatgaaatgtgcatgacgttatagacacgacactccacattttt-attgcgtctgtgggataaataat |
35970370 |
T |
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| Q |
118 |
tcaga-----------atcatatgcaataatagagtttggaaattgaagagaaattattggcaaatggctcattttaaaccacatgcatgtttatcttta |
206 |
Q |
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| T |
35970371 |
tcagaatgcagacagaatcatatgcaataatagagtttggaaattgaagagaaattattggcaaatggctcattttaaaccacatgcatgcttatcttta |
35970470 |
T |
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| Q |
207 |
gtctagacattaccaatccaacttcttcaacttgcttggtatggtatgtaattatgtatgcatatattaggatatatctagataaaaaattgtgtatatg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35970471 |
gtctagacattaccaatccaacttcttcaacttgcttggtatggtatgtaattatgtatgcatatatgaggatatatctagataaaaaattgtgtatatg |
35970570 |
T |
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| Q |
307 |
gtgtttaccctatgct |
322 |
Q |
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|||||||||||||||| |
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| T |
35970571 |
gtgtttaccctatgct |
35970586 |
T |
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