View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17901_low_27 (Length: 312)

Name: NF17901_low_27
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17901_low_27
NF17901_low_27
[»] scaffold0003 (1 HSPs)
scaffold0003 (9-312)||(8966-9263)
[»] chr7 (1 HSPs)
chr7 (9-312)||(16420254-16420551)
[»] chr8 (3 HSPs)
chr8 (9-312)||(5538214-5538515)
chr8 (196-288)||(44667720-44667810)
chr8 (217-276)||(6816940-6816995)
[»] chr3 (1 HSPs)
chr3 (46-199)||(19932297-19932449)
[»] chr1 (4 HSPs)
chr1 (46-199)||(18901509-18901668)
chr1 (145-245)||(51784667-51784772)
chr1 (19-58)||(18901448-18901487)
chr1 (46-84)||(51784794-51784832)
[»] chr5 (2 HSPs)
chr5 (60-246)||(37940325-37940512)
chr5 (19-58)||(37940550-37940589)
[»] chr6 (2 HSPs)
chr6 (224-306)||(3508666-3508745)
chr6 (221-293)||(34518720-34518788)
[»] scaffold0004 (1 HSPs)
scaffold0004 (222-312)||(188992-189083)
[»] chr2 (1 HSPs)
chr2 (221-306)||(2038040-2038125)


Alignment Details
Target: scaffold0003 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 312
Target Start/End: Original strand, 8966 - 9263
Alignment:
Q  9 gtcgaagaaaatgtgccactagatattactagctagaatttattagagtaatatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagag 108  Q
    |||||| || |||||||||||||||||||||||||| ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||    
T  8966 gtcgaaaaatatgtgccactagatattactagctagtatttattagagtaatata--ataagattagcaagaaagtaggaaaacaaaaggaagcatagag 9063  T
Q  109 caaaggaagtgattgacctgtggaaataaacatcccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagttcgtgggaga 208  Q
    ||||||||||||||| | |||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  9064 caaaggaagtgattggcgtgtggaaataaagatcc-acgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggaga 9162  T
Q  209 attattagtaaccggttcctattctttttcacacacacaccccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagagaacg 308  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9163 attattagtaaccggttcctattctttttcacacaca---cccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagagaatg 9259  T

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Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 312
Target Start/End: Original strand, 16420254 - 16420551
Alignment:
Q  9 gtcgaagaaaatgtgccactagatattactagctagaatttattagagtaatatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagag 108  Q
    |||||| || |||||||||||||||||||||||||| ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||    
T  16420254 gtcgaaaaatatgtgccactagatattactagctagtatttattagagtaatata--ataagattagcaagaaagtaggaaaacaaaaggaagcatagag 16420351  T
Q  109 caaaggaagtgattgacctgtggaaataaacatcccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagttcgtgggaga 208  Q
    ||||||||||||||| | |||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  16420352 caaaggaagtgattggcgtgtggaaataaagatcc-acgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggaga 16420450  T
Q  209 attattagtaaccggttcctattctttttcacacacacaccccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagagaacg 308  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16420451 attattagtaaccggttcctattctttttcacacaca---cccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagagaatg 16420547  T

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Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 312
Target Start/End: Complemental strand, 5538515 - 5538214
Alignment:
Q  9 gtcgaagaaaatgtgccactagatattactagctagaatttattagagtaatatata--atcagattagcaagaaagtaggaaaacaaaaggaagcatag 106  Q
    |||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||    
T  5538515 gtcgaaaaatatgtgccattagatattactagctagtatttattagagtaatatatataataagattagcaagaaagtaggaaaacaaaaggaagcatag 5538416  T
Q  107 agcaaa-ggaagtgattgacctgtggaaataaacatcccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagttcgtggg 205  Q
    |||||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  5538415 agcaaaaggaagtgattg-cgtgtggaaataaacatcc-acgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagctagtggg 5538318  T
Q  206 agaattattagtaaccggttcctattctttttcacacacacaccccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagaga 305  Q
    |||||||||||||||| |||||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5538317 agaattattagtaaccagttcctattccttttcacacaca---cccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagaga 5538221  T
Q  306 acgggaa 312  Q
    |||||||    
T  5538220 acgggaa 5538214  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 288
Target Start/End: Original strand, 44667720 - 44667810
Alignment:
Q  196 agttcgtgggagaattattag--taaccggttcctattctttttcacacacacaccccctttctatactttgaagaacaaaaacaaaatacatag 288  Q
    |||| |||||||| |||||||  |||||||||||||||| ||||||||||||| |     |||||| ||||||||||||||||||||| ||||||    
T  44667720 agttagtgggagagttattagaataaccggttcctattcattttcacacacactca----ttctatgctttgaagaacaaaaacaaaagacatag 44667810  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 6816940 - 6816995
Alignment:
Q  217 taaccggttcctattctttttcacacacacaccccctttctatactttgaagaacaaaaa 276  Q
    |||||||||| |||||||||| ||||||||    || |||||||||||||||||||||||    
T  6816940 taaccggttcttattctttttaacacacac----ccattctatactttgaagaacaaaaa 6816995  T

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Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 46 - 199
Target Start/End: Original strand, 19932297 - 19932449
Alignment:
Q  46 atttattagagtaatatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagagcaaaggaagtgattgacctgtggaaataaacatccca 145  Q
    |||||||| ||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||  |||||||||||||| |||    
T  19932297 atttattaaagtaatatataataagattagcaataaagtaggaaagcaaaaggaagcatagagaaaaggaactgattgactagtggaaataaacat-cca 19932395  T
Q  146 cgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagtt 199  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  19932396 cgtttcttcccaatcccattttccactatgttccatatttttaggaaataagtt 19932449  T

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Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 46 - 199
Target Start/End: Original strand, 18901509 - 18901668
Alignment:
Q  46 atttattagagtaatatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagagcaaaggaagtgattgacctgtggaaataaacat---- 141  Q
    |||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||  ||||||||||||||        
T  18901509 atttattaaagtaatatataataagattagcaagaaagtaggaaagcaaaaggaagcatagagaaaaggaactgattgactggtggaaataaacattaaa 18901608  T
Q  142 --cccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagtt 199  Q
       |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  18901609 catccacgtttcttcccaatcccattttccactatgttccatatttttaggaaataagtt 18901668  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 51784772 - 51784667
Alignment:
Q  145 acgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagttcgtgggagaattat-----tagtaaccggttcctattctttttca 239  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||  ||  ||||     || |||||||||||||||||||||||    
T  51784772 acgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtgacagtgttattataataataaccggttcctattctttttca 51784673  T
Q  240 cacaca 245  Q
    | ||||    
T  51784672 cccaca 51784667  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 18901448 - 18901487
Alignment:
Q  19 atgtgccactagatattactagctagaatttattagagta 58  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  18901448 atgtgacactagatattactagctagtatttattagagta 18901487  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 51784832 - 51784794
Alignment:
Q  46 atttattagagtaatatataatcagattagcaagaaagt 84  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  51784832 atttattaaagtaatatataataagattagcaagaaagt 51784794  T

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Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 60 - 246
Target Start/End: Complemental strand, 37940512 - 37940325
Alignment:
Q  60 tatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagagcaaaggaagtgattgacctgtggaaataaacatcccacgtttcttcccaat 159  Q
    |||||||| ||||||||||||||||||| || ||||| |||||||||   ||||||| ||||| ||  |||||||||||||||| |||||||||||||||    
T  37940512 tatataataagattagcaagaaagtaggtaagcaaaaagaagcataggaaaaaggaactgattaactagtggaaataaacatcc-acgtttcttcccaat 37940414  T
Q  160 cccattttccactatgtcccatattgttaggaaataagttcgtgggagaattat--tagtaaccggttcctattctttttcacacacac 246  Q
    | ||||||||||||||| ||||||| |||||||||||||| |||  |   ||||  || |||||||||||||||||||||||| |||||    
T  37940413 ctcattttccactatgttccatatttttaggaaataagttagtgacaatgttattataataaccggttcctattctttttcacccacac 37940325  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 37940589 - 37940550
Alignment:
Q  19 atgtgccactagatattactagctagaatttattagagta 58  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  37940589 atgtgccactagatattactagctagtatttattagagta 37940550  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 3508666 - 3508745
Alignment:
Q  224 ttcctattctttttcacacacacaccccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagagaa 306  Q
    |||||| ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3508666 ttcctactctttttcacacacac---ccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagagaa 3508745  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 34518788 - 34518720
Alignment:
Q  221 cggttcctattctttttcacacacacaccccctttctatactttgaagaacaaaaacaaaatacatagtgaga 293  Q
    ||||||||||||||||||||||| ||    || |||||||||||||||||||||| |||||||||||| ||||    
T  34518788 cggttcctattctttttcacacatac----ccattctatactttgaagaacaaaatcaaaatacatagagaga 34518720  T

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Target: scaffold0004 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 312
Target Start/End: Complemental strand, 189083 - 188992
Alignment:
Q  222 ggttcctattctttttcacacacacaccccctttctatactttgaagaacaaaa-----acaaaatacatagtgagaaagagaaagagaacgggaa 312  Q
    |||||||||| ||||||||||| ||    || ||||||||||||||||||||||     ||||||||||||| ||||||||||||| |||||||||    
T  189083 ggttcctattgtttttcacacatac----ccattctatactttgaagaacaaaacaaaaacaaaatacatagggagaaagagaaagggaacgggaa 188992  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 306
Target Start/End: Original strand, 2038040 - 2038125
Alignment:
Q  221 cggttcctattctttttcacacacacaccccctttctatactttgaagaaca-----aaaacaaaatacatagtgagaaagagaaagagaa 306  Q
    ||||||||||||||||     ||||||  ||| |||||||||||||||||||     ||||||||||||||||  ||||||||||||||||    
T  2038040 cggttcctattctttt-----cacacatacccattctatactttgaagaacaaaacaaaaacaaaatacataggaagaaagagaaagagaa 2038125  T

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