View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_low_31 (Length: 290)
Name: NF17901_low_31
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 28 - 281
Target Start/End: Original strand, 9713583 - 9713836
Alignment:
| Q |
28 |
aatagactttttaatcacttgacacaacatatatcatttttaaataaagaaatttattgtaatggttaatacttgttctcggccgaccaaagcatttagg |
127 |
Q |
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| T |
9713583 |
aatagactttttaatcacttgacagaacatatatcatttttaaataaagaaatttattgtaatggttattacttgttctcgaccggccaaagcatttagg |
9713682 |
T |
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| Q |
128 |
cccaataaaaagaaagcccaaactccgcgtttggaaaccaggtctcccgtatcgaagtctccaggccttactttcatgttgtaattggtggtcgtggcct |
227 |
Q |
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| T |
9713683 |
cctaataaaaagaaagcccaaactccgcgtttggaaaccaggtctcctgtatcgaagtttccaggcgttactttcctgttgtaattgttggtcatggcct |
9713782 |
T |
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| Q |
228 |
gtttgatggagccctcagttagggcggcaaagttccttgatttgtcgatgatgt |
281 |
Q |
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| T |
9713783 |
gtttgatggagccctcggttagggcggcaaagttccttgattcgtcgatgatgt |
9713836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 28 - 281
Target Start/End: Original strand, 13579850 - 13580103
Alignment:
| Q |
28 |
aatagactttttaatcacttgacacaacatatatcatttttaaataaagaaatttattgtaatggttaatacttgttctcggccgaccaaagcatttagg |
127 |
Q |
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| T |
13579850 |
aatagactttttaatcacttgacagaacatatatcatttttaaataaagaaatttattgtaatggttattacttgttctcgaccggccaaagcatttagg |
13579949 |
T |
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| Q |
128 |
cccaataaaaagaaagcccaaactccgcgtttggaaaccaggtctcccgtatcgaagtctccaggccttactttcatgttgtaattggtggtcgtggcct |
227 |
Q |
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| T |
13579950 |
cctaataaaaagaaagcccaaactccgcgtttggaaaccaggtctcctgtatcgaagtttccaggcgttactttcctgttgtaattgttggtcatggcct |
13580049 |
T |
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| Q |
228 |
gtttgatggagccctcagttagggcggcaaagttccttgatttgtcgatgatgt |
281 |
Q |
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| T |
13580050 |
gtttgatggagccctcggttagggcggcaaagttccttgattcgtcgatgatgt |
13580103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 18802355 - 18802453
Alignment:
| Q |
179 |
tcgaagtctccaggccttactttcatgttgtaattggtggtcgtggcctgtttgatggagccctcagttagggcggcaaagttccttgatttgtcgatg |
277 |
Q |
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| T |
18802355 |
tcgaagtctctgggtcttactctcctgttgtatcgggtggtcgtggcctgtttgatggcggcctcagttagggaggaaaagttctttgatttgtcgatg |
18802453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 9620828 - 9620874
Alignment:
| Q |
114 |
ccaaagcatttaggcccaataaaaagaaagcccaaactccgcgtttg |
160 |
Q |
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| T |
9620828 |
ccaaagcatttaggcccaatacaaacaaagaccaaactccgcatttg |
9620874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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