View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17901_low_37 (Length: 276)
Name: NF17901_low_37
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_low_37 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 52511922 - 52512039
Alignment:
| Q |
159 |
tactgacatgaatagagttagtagaagaggacatgttcgtggggtggtggtgctgcataagatgaagatgaaaagaaaggttgtcatgatcatgagtagt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52511922 |
tactgacatgaatagagttagtagaagaggacatgttcgtggggtggtggtgttgcataggatgaagatgaaaagaaaggttgtcatgatcatgagtagt |
52512021 |
T |
|
| Q |
259 |
aaatctactatgatgatg |
276 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
52512022 |
aaatctactatgatgatg |
52512039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 52511818 - 52511861
Alignment:
| Q |
61 |
tgaatatcaccttgcttatttacatgcacgcatacgtatggcgt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52511818 |
tgaatatcaccttgcttatttacatgcacgcatacgtatggcgt |
52511861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University