View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_low_38 (Length: 274)
Name: NF17901_low_38
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 10 - 258
Target Start/End: Complemental strand, 3856383 - 3856150
Alignment:
| Q |
10 |
gcagagaccagatgcttgatcaacgttgcgaagcaacatgacaggaactccaaccttcaaacataattattattttttctaannnnnnnnnatgtgtgtg |
109 |
Q |
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| T |
3856383 |
gcagagaccagatgcttgatcaacgttgcgaagcaacatgacatgaactccaaccttcaaacataattattattttttctaatttttttt-atgtgtgtg |
3856285 |
T |
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| Q |
110 |
actaaatagagtgaccaaatacttgtgtccattcaagaattgctccttttcaaaagcccnnnnnnnnactttcaaaatcaacgaagaaggaggatcagct |
209 |
Q |
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| T |
3856284 |
ac-------------caaatacttgtgtccattcaagaattgctccttttcaaaagcccttttttt-actttcaaaatcaacgaagaaggaggatcagct |
3856199 |
T |
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| Q |
210 |
catggtttcttaaactatactccgtcctatgagttcttgcctctctttg |
258 |
Q |
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| T |
3856198 |
catggtttcttaaactatactccgttctatgagttcttgcctctctttg |
3856150 |
T |
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Back To:
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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 46471415 - 46471350
Alignment:
| Q |
10 |
gcagagaccagatgcttgatcaacgttgcgaagcaacatgacaggaactccaaccttcaaacataa |
75 |
Q |
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| T |
46471415 |
gcagagaccagatgcttgatcaacgttgcgaagcaacatgacaggaactccaaccttcaaacataa |
46471350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 33446177 - 33446133
Alignment:
| Q |
25 |
ttgatcaacgttgcgaagcaacatgacaggaactccaaccttcaa |
69 |
Q |
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| T |
33446177 |
ttgatcaacgttgcgaagcaacataacaggaacaccaaccttcaa |
33446133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 43377706 - 43377752
Alignment:
| Q |
104 |
tgtgtgactaaatagagtgaccaaatacttgtgtccattcaagaatt |
150 |
Q |
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| T |
43377706 |
tgtgtgactaaatagagggtccaaattcttgtgtccatccaagaatt |
43377752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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