View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_low_5 (Length: 501)
Name: NF17901_low_5
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_low_5 |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: scaffold0470 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 30 - 482
Target Start/End: Complemental strand, 5637 - 5198
Alignment:
| Q |
30 |
gcaatcatgaattaggaggtgtgaagtgttgtaattcatgattagataatgattacttgttga----accagttatctatgttgttaagtaactttcttg |
125 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||| | || |||||||||||||||||| |||| |||| | |
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| T |
5637 |
gcaatcatgaattaggaggtctgaa-tgttgtaattcatgattagatactgattacttgttaattaaacaagttatctatgttgttaactaacattctag |
5539 |
T |
|
| Q |
126 |
tttgttat---gaaagttagtcgattagtatagttagtattggtagttatggtagtttcatgacttgtggaacaagttattatggtagttagagattgaa |
222 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||||||||| |
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| T |
5538 |
tttgttattatgaaagttagtcgattagtacagttagtattggtagtt---------tcatgacttatggaacaagtta------------gagattgaa |
5460 |
T |
|
| Q |
223 |
atgactatgtatatcagcattagtccattcatcagtaatatgcattcccttcaatagaaattataatggtgctataattaaagacaaggaannnnnnn-- |
320 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5459 |
atgactatgtatatcagcattagtccattcatcgataatgtgcattcccttcaatagaaattataatggtgctataattaaagacaaggaatttttattt |
5360 |
T |
|
| Q |
321 |
attgaaaacaacaattatttattatagaatgataacacaattatttttgacttcttacaatatgcaagtttgcacatgattagtgcatgcttgccaatac |
420 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5359 |
attgaaaacaacaattatttattataaaatgataacacaattatttttgacttcttacaccatgcaagtttgcacatgattagtgcatgcttgccaatac |
5260 |
T |
|
| Q |
421 |
ataacatcaaaaagctaggaactttctgccaatattttaacacatgaaatcgaactttaaac |
482 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5259 |
ataacatcaaaaagctaggaactttctgccaatattttaacacatgaaatcgaactttaaac |
5198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 30 - 482
Target Start/End: Complemental strand, 6616351 - 6615912
Alignment:
| Q |
30 |
gcaatcatgaattaggaggtgtgaagtgttgtaattcatgattagataatgattacttgttga----accagttatctatgttgttaagtaactttcttg |
125 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||| | || |||||||||||||||||| |||| |||| | |
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| T |
6616351 |
gcaatcatgaattaggaggtctgaa-tgttgtaattcatgattagatactgattacttgttaattaaacaagttatctatgttgttaactaacattctag |
6616253 |
T |
|
| Q |
126 |
tttgttat---gaaagttagtcgattagtatagttagtattggtagttatggtagtttcatgacttgtggaacaagttattatggtagttagagattgaa |
222 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||||||||| |
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|
| T |
6616252 |
tttgttattatgaaagttagtcgattagtacagttagtattggtagtt---------tcatgacttatggaacaagtta------------gagattgaa |
6616174 |
T |
|
| Q |
223 |
atgactatgtatatcagcattagtccattcatcagtaatatgcattcccttcaatagaaattataatggtgctataattaaagacaaggaannnnnnn-- |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6616173 |
atgactatgtatatcagcattagtccattcatcgataatgtgcattcccttcaatagaaattataatggtgctataattaaagacaaggaatttttattt |
6616074 |
T |
|
| Q |
321 |
attgaaaacaacaattatttattatagaatgataacacaattatttttgacttcttacaatatgcaagtttgcacatgattagtgcatgcttgccaatac |
420 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6616073 |
attgaaaacaacaattatttattataaaatgataacacaattatttttgacttcttacaccatgcaagtttgcacatgattagtgcatgcttgccaatac |
6615974 |
T |
|
| Q |
421 |
ataacatcaaaaagctaggaactttctgccaatattttaacacatgaaatcgaactttaaac |
482 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6615973 |
ataacatcaaaaagctaggaactttctgccaatattttaacacatgaaatcgaactttaaac |
6615912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 365 - 483
Target Start/End: Complemental strand, 6750561 - 6750444
Alignment:
| Q |
365 |
ttttgacttcttacaatatgcaagtttgcacatgattagtgcatgcttgccaatacataacatcaaaaagctaggaactttctgccaatattttaacaca |
464 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6750561 |
ttttgacttcttataatatgcaagtttgcacatgattagtacatgcttgccaatacataacatcaaaaagctaggaactttccgccaatattttaacaca |
6750462 |
T |
|
| Q |
465 |
tgaaatcgaactttaaacc |
483 |
Q |
| |
|
|| |||| ||||||||||| |
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| T |
6750461 |
tggaatc-aactttaaacc |
6750444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 365 - 483
Target Start/End: Complemental strand, 6757352 - 6757235
Alignment:
| Q |
365 |
ttttgacttcttacaatatgcaagtttgcacatgattagtgcatgcttgccaatacataacatcaaaaagctaggaactttctgccaatattttaacaca |
464 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6757352 |
ttttgacttcttataatatgcaagtttgcacatgattagtacatgcttgccaatacataacatcaaaaagctaggaactttccgccaatattttaacaca |
6757253 |
T |
|
| Q |
465 |
tgaaatcgaactttaaacc |
483 |
Q |
| |
|
|| |||| ||||||||||| |
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| T |
6757252 |
tggaatc-aactttaaacc |
6757235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 365 - 471
Target Start/End: Complemental strand, 6659634 - 6659528
Alignment:
| Q |
365 |
ttttgacttcttacaatatgcaagtttgcacatgattagtgcatgcttgccaatacataacatcaaaaagctaggaactttctgccaatattttaacaca |
464 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6659634 |
ttttgacttcttataatatgcaagtttgcacatgattagtacatgcttgccaatacataacatcaaaaagctaggaactttccaccaatattttaacaca |
6659535 |
T |
|
| Q |
465 |
tgaaatc |
471 |
Q |
| |
|
|| |||| |
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|
| T |
6659534 |
tggaatc |
6659528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 365 - 471
Target Start/End: Complemental strand, 6740036 - 6739930
Alignment:
| Q |
365 |
ttttgacttcttacaatatgcaagtttgcacatgattagtgcatgcttgccaatacataacatcaaaaagctaggaactttctgccaatattttaacaca |
464 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6740036 |
ttttgacttcttataatatgcaagtttgcacatgattagtacatgcttgccaatacataacatcaaaaagctaggaactttccaccaatattttaacaca |
6739937 |
T |
|
| Q |
465 |
tgaaatc |
471 |
Q |
| |
|
|| |||| |
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|
| T |
6739936 |
tggaatc |
6739930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 482
Target Start/End: Original strand, 19058755 - 19058784
Alignment:
| Q |
453 |
tattttaacacatgaaatcgaactttaaac |
482 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
19058755 |
tattttaacacatgaaatcgaactttaaac |
19058784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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