View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17901_low_57 (Length: 236)
Name: NF17901_low_57
Description: NF17901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17901_low_57 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 139119 - 139338
Alignment:
| Q |
1 |
aagaagagagttatttacattaacatatctcattaacggctgattgtgaagatttcagtaaaaatacattctaatagagttgggtatgattcatatttgc |
100 |
Q |
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| T |
139119 |
aagaagagagttatttacatgaacatatctcattaacggctgattgtgaagatttcagaaaaaatacattctaatagagttgggtatgattcatatttgt |
139218 |
T |
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| Q |
101 |
ttaaaaatggacatacactcgagcataaagaaaagagctgaaagcgcaacgagcacagcgaagcgagagtccctaccatttgggcttggcccaattcgtt |
200 |
Q |
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| T |
139219 |
ttaaaaatggacatacactcgagcataaagaaaagagctgaaagcgcaacgagcacagcgaagcgagagtccctacca-ttgggcttggcccaattcgtt |
139317 |
T |
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| Q |
201 |
tgttaaattatgacttggaag |
221 |
Q |
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||||||||||||||| ||||| |
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| T |
139318 |
tgttaaattatgactaggaag |
139338 |
T |
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